KEGG   Brassica napus (rape): 125577212
Entry
125577212         CDS       T04128                                 
Name
(RefSeq) general transcription factor IIH subunit 2
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
bna  Brassica napus (rape)
Pathway
bna03022  Basal transcription factors
bna03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    125577212
  09124 Replication and repair
   03420 Nucleotide excision repair
    125577212
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bna03021]
    125577212
   03400 DNA repair and recombination proteins [BR:bna03400]
    125577212
Transcription machinery [BR:bna03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     125577212
DNA repair and recombination proteins [BR:bna03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     125577212
SSDB
Motif
Pfam: Ssl1 C1_4 VWA_2 Tfb4 IBR
Other DBs
NCBI-GeneID: 125577212
NCBI-ProteinID: XP_048594303
LinkDB
Position
A8:22733525..22736041
AA seq 422 aa
MSNQRKRPNGEREEDDEEDDAEGIGQWERAYVDDRSWEALQEDESGLLRPIDTSAIYHAQ
YRRRLRMLSAAAAGTRIQKGLIRYLYIVIDFSRAAAETDFRPSRMAIMAKHVEAFIREFF
DQNPLSQIGLVSIKNGIAHTLTDLGGSPESHIQALMGKLEAAGDSSLQNALELVHEHLNQ
IPSYGHREVLILYSALSTSDPGDIMETIQKCKKSRLRCSVIGLSAEMFICKHLCQETGGL
YSVAVDEVHLKDLLLEHAPPPPAIAEFAISNLIKMGFPQRAAEGSMAICSCHKEVKIGAG
YTCPRCKARVCELPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPTLSSSNDPRRKLG
KSCFGCQQSLLGAGNKPGPCVTCRKCKHYFCLDCDIYIHESLHNCPGCESTHRPKSVSLL
EE
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgagtaatcagagaaagagacccaacggagaaagagaagaagacgacgaggaggacgat
gcggaaggtatcggccagtgggagagagcttacgttgacgacagatcctgggaggccttg
caagaggacgagtctgggcttctacggccgattgacaccagtgccatttaccatgctcag
tatcgccgccgcctccgcatgctctccgccgccgcagctggtactcgcatccagaagggg
cttattcgctatttatacatcgtcattgacttctctcgggcagctgcggaaacagatttc
agaccaagccggatggccataatggcgaaacatgttgaagcattcattagagagttcttt
gaccagaatcctctgagtcaaatcggtctggtctctataaaaaacggaatcgcacatacc
ttaacagatcttggtggcagtcctgagtcacacatacaagcgttgatgggaaagctggaa
gccgcgggtgactcatctttgcagaacgccctggagcttgtgcatgagcatctcaaccag
atcccatcttatggtcatcgcgaagttctgatattgtattcagctctaagcacctctgat
ccgggagatatcatggagacaattcagaaatgcaagaaatcaagattaagatgctctgtt
attggactctctgcagagatgttcatatgcaaacacctatgccaagaaactggtgggtta
tactccgttgcagtagatgaggtgcatctaaaggatttgcttcttgaacatgcgcctcca
cctccggcaatagcagaatttgcaatttctaatctgatcaagatgggtttcccacaaaga
gctgctgagggttcaatggcgatctgttcgtgtcataaggaagttaagatcggagctggt
tacacgtgcccgagatgcaaagctcgtgtgtgtgagctccctacggaatgcaccatctgt
ggtctgacgcttgtttcgtcgccacatcttgcgagatcataccatcacctcttcccaatt
gctccgtttgatgaggttcctactctttcaagttcgaatgatcctcggagaaaattgggg
aagagttgttttggttgtcaacagagcttacttggtgcagggaacaaaccgggaccatgc
gtaacatgtcggaaatgcaagcactatttctgtctggactgcgacatatacatccacgag
agcttacacaactgtcctggttgcgagagcactcaccgtcctaaatctgtgtccttgttg
gaagaatga

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