Brassica napus (rape): 125577598
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Entry
125577598 CDS
T04128
Name
(RefSeq) probable CCR4-associated factor 1 homolog 5
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125577598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
125577598
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125577598
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125577598
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Plexin_cytopl
Motif
Other DBs
NCBI-GeneID:
125577598
NCBI-ProteinID:
XP_048595014
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All DBs
Position
A9:25845181..25852415
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AA seq
344 aa
AA seq
DB search
MREIFGSKNEEEMELIKKVLKTCEFIAVDTEFPGCLKETPIGATDETRYKNLKFNVERTK
PIQLGFTLFERDGSIGGTWEVNFKDFDARTDACNEKSIEFLRRNGLNFKKIRQEGVGMEE
FFKEFGQILKDVDNKLKWVSFDGSYDLAYLVQGLTGRKPLPETLEAFNKTVEETLGLTFD
VKKIAVDCKGVSARYGLQRIADDLHIKRVGDAHHAGSDSELTARVFTDLIFSISKEQKRE
LEEEKQNEERVRRAMHIMHESEQKRKREEEEETEERMKRAMHIMHEAEEAFVMERRGYVT
VQPRCGYLPVLHPPPRPVVFHPYPPQFAGYFVQPQRHIHPLFLH
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgagagaaatttttggttctaagaatgaagaagagatggaactgattaagaaagttcta
aaaacgtgtgagttcatagccgtggatacggagttcccgggttgtttgaaggagactcct
ataggcgctacggacgagactcgatacaagaatttgaagttcaatgtcgaacggacaaaa
cctattcaactaggtttcactctgtttgaacgcgacggaagtatcgggggtacgtgggag
gttaatttcaaggattttgatgcgagaaccgatgcttgtaacgagaagtcgatagagttt
cttagacgcaacggtctcaatttcaagaaaatcagacaagagggagtggggatggaagag
tttttcaaagagttcggtcagattctcaaagacgtggacaacaagttgaagtgggtttcg
ttcgacggttcgtacgacttagcgtatctggttcaaggcctgaccggaagaaaaccactg
cccgagactttagaagcttttaacaaaaccgttgaggaaactctagggcttacttttgat
gtcaagaagattgcggttgattgcaaaggtgtgtctgcccgttacggtttgcagagaata
gcagacgatcttcacatcaaacgtgtgggtgatgcgcaccatgccggttccgacagcgag
ctcactgcccgagtgtttactgacttgatattcagcatatcgaaggagcaaaagagagag
cttgaagaggagaaacagaatgaagagcgtgtgagacgtgctatgcatattatgcacgaa
tcggaacaaaagagaaagcgtgaagaggaggaagagactgaagagcgtatgaaacgcgct
atgcatattatgcacgaagctgaagaagcttttgtgatggaaagacgtggttatgtgacg
gtacagccaagatgtggttacttaccggtactgcatccaccaccaagaccggttgtgttc
catccttacccaccacagtttgctggctactttgtacagccacagcgacacattcatcca
ttgtttttacattaa
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