Brassica napus (rape): 125577641
Help
Entry
125577641 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125577641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
125577641
03036 Chromosome and associated proteins [BR:
bna03036
]
125577641
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125577641
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125577641
mRNA degradation factors
5'-3' decay
Decapping complex
125577641
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125577641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
125577641
NCBI-ProteinID:
XP_048595112
LinkDB
All DBs
Position
A9:627566..631225
Genome browser
AA seq
510 aa
AA seq
DB search
MNNNNNNRGRYPPGIGAGRAAVNPNPNFQSRPGYQQQPPPQYVQRGGYAPQNHQQQFQQA
TSQQVQQQHGYQQQQQWLRRPQISGGNSNGDAVAEVEKSVLSEAVDTNSEDWKARLKLPA
PDTRFRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARA
KNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTG
GTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVFVMDEADKLLSQEFQPSVE
HLISFLPQNRQILMFSATFPVTVKDFKDRFLTNPYIINLMDELTLKGITQFYAFVEERQK
IHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFR
NGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYE
DRFNLYRIEQELGTEIKQIPPHIDQAIYCQ
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaacaacaacaacagaggaaggtatcctccagggatcggtgctggtcgtgct
gccgtcaatcctaaccctaatttccagtcgcggcctggttaccaacagcagccgccgccg
cagtacgtgcagcgcggcggttacgctccgcagaatcatcaacagcagtttcagcaagcc
acgtctcagcaggtgcaacaacaacatggataccaacagcaacaacaatggcttcgaaga
ccccagatctctggcggtaacagtaatggcgatgcagttgcagaagttgagaagagtgtt
ctgtccgaagctgtcgacacaaattcggaagattggaaggcgaggcttaaactacctgca
cctgatactcgcttcagaactgaggatgtgactgcaactaaaggaaacgagtttgaagat
tattttctgaaacgagagcttctaatgggaatctatgagaagggttttgaaagaccttct
cctattcaggaagagagtatcccaatcgccttaaccggtagagacatccttgcccgagct
aagaacggcactggcaagactgccgccttctgtattcctgtcttggaaaaaattgaccaa
gataacaacgttattcaagctgtgataattgttccaactcgagagttagcccttcagaca
tcacaggtgtgcaaggagctagggaagcatttgaagattcaagtcatggtgaccactgga
ggcaccagtctcaaagatgatatcatgcgtttgtatcagcctgtccatttactggttgga
actcctgggaggattctggatcttaccaagaaaggtgtttgtgttttgaaagattgctcc
gtctttgttatggatgaggctgataagcttttatctcaagagttccaaccttcagtggag
catctgatcagctttcttccgcaaaatcgtcagatactgatgttctcagccacgtttcct
gtcactgtaaaggattttaaggatagatttctgacgaatccttacatcataaatctcatg
gatgagcttacgctcaagggtattacgcagttctatgcttttgttgaagaacgacagaaa
attcattgcttgaatacactcttctccaagctgcaaattaaccaatccatcatattctgc
aattctgtgaaccgcgtggagctcttagctaagaaaattacagagcttgggtattcgtgc
ttttacatccatgcaaagatgcttcaagaccaccgaaacagagtgttccatgacttccgc
aatggtgcatgccggaatctcgtgtgtactgacctattcacacgtgggattgatattcaa
gcggtcaatgtggtgataaactttgatttcccaaagactgcagaaacttatctccatagg
gttggtcggtcaggaaggtttggccatcttggtttagctgtgaacctcatcacctatgag
gaccgctttaacctttaccggattgagcaagagcttggaacggagatcaagcaaattcct
ccacatatcgatcaggcaatttattgccaataa
DBGET
integrated database retrieval system
