Brassica napus (rape): 125578615
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Entry
125578615 CDS
T04128
Name
(RefSeq) mRNA-decapping enzyme-like protein
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125578615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
125578615
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125578615
mRNA degradation factors
5'-3' decay
Decapping complex
125578615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
CD1375-like
Motif
Other DBs
NCBI-GeneID:
125578615
NCBI-ProteinID:
XP_048597846
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Position
A9:complement(43331013..43333059)
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AA seq
379 aa
AA seq
DB search
MILVLLGQFKSDREIFTTSDLNLRKMSQNGKLIPPNMDQSSTRLLNLTVLQRIDPFIEEI
LITAAHVTFYEFNIEISQWSRKDVEGSLFVVKRNKQQPRFQFIVMNRRNTDNLVEDLLGD
FEYEVQGPYLLYRNASQEVNGIWFYNERECEEVARLFDRLISAYSKANQKPNTSSSKSEF
RELEAVPTMAAMDGPLEPSLTARDAPNDPAFVNFFSSAMTLGNGSASGPTYQSSATPLQP
HQPTIASPAPLQSSSPIMSHFENNPDLISSNNSNVHTDLVTPSSFFAPPRTMTQPHLIPG
SSIPTAPPQNFNDASHHQRQHGTPMLQPFPPPTPPPSLAPSYSVPVINRDKVKEALLKLV
QENEFIDMVTRALQNAHQQ
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgattctcgtactcttaggtcaattcaaatcggatcgcgagattttcaccacatctgat
ctgaacttaagaaagatgtctcagaacgggaagctgatcccaccaaacatggatcagagc
agtacgaggctactcaatctcacagttctccagcgaatcgatcctttcatcgaggagatc
cttatcacagcagctcatgtcaccttctatgaattcaacattgagattagtcaatggagt
cgtaaggatgttgaagggtctttgtttgttgtcaaaagaaataaacaacaacctcggttt
cagtttattgtaatgaatcgccggaacacagataatctggtggaagatctactgggagat
ttcgagtatgaagtccaaggtccatatttactttaccgtaacgcatctcaagaagtaaat
ggcatttggttctacaatgaacgtgaatgtgaggaggttgcacgtcttttcgacagatta
attagcgcatattccaaggcaaaccagaagccaaacacgtcatcgtcgaaaagcgagttt
agggaactggaagctgtgcctacaatggcggctatggatggtcctcttgaaccatcttta
actgcaagggatgcgcctaatgatcctgcttttgtcaacttcttcagctcagcgatgact
cttggaaacgggtctgcaagtggaccaacataccaatcatcagcaactcctctacaacct
caccaacccaccattgcgtctcctgcacctctgcaatcatcctctcctattatgtctcac
tttgagaacaaccctgatcttatcagcagcaacaactccaacgttcacacggatctggtg
acgccttcctcgttctttgcgcccccacgaacgatgacacaaccgcacctcattcctggt
tcatctattcccactgcgcctcctcagaactttaatgatgcctctcaccatcagcgccag
catggtactccgatgctccagcctttcccaccaccaactccaccaccatcgctcgctcct
tcatacagtgtcccggttattaacagagacaaagtcaaagaagcccttttgaagctagtt
caggagaatgaattcatcgacatggtgacccgagctttacaaaatgcacatcaacaatga
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