Brassica napus (rape): 125583349
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Entry
125583349 CDS
T04128
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, chloroplastic-like
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125583349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
125583349
03016 Transfer RNA biogenesis [BR:
bna03016
]
125583349
Enzymes [BR:
bna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
125583349
Messenger RNA biogenesis [BR:
bna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
125583349
Transfer RNA biogenesis [BR:
bna03016
]
Prokaryotic type
tRNA degradation factors
125583349
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
Motif
Other DBs
NCBI-GeneID:
125583349
NCBI-ProteinID:
XP_048606041
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All DBs
Position
C3:23404228..23411647
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AA seq
907 aa
AA seq
DB search
MLTSPSNALHSTPHFWPIRRSRLLLRPRNFPRFHSGGGNFCSLSLLSARSGPSRFRIRAL
AGPEASEDGGLAFPNHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLAD
VPSEPSDFLPLYVHYQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFY
NETQILSWVLSYDGLHAPDALAVTSAGIAVALSEVPNSKAVAGVRVGLIGGEFIVNPTVK
EMEESQLDLFLAGTDSAILTIEGYSNFLPEEMLVKAVKVGQDAVQATCTAIEALAKKYGK
PKMVDAIRLPPPELYKHVKELAGEELSKALQIKSKIARRKAITSLEEKVLTILTEKGYVI
DEAAFGTTEAQPELLEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKE
VSSKLLRRRIVEGGKRSDGRTPDGIRPINSRCGLLPRAHGSSLFTRGETQALAVVTLGDK
QMAQRIDNLEGSDEYKRFYLQYTFPPSSVGEVGRIGAPGRREIGHGTLAERALETILPSD
DDFPYTIRVESTILESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGD
GSPLILSDITGAEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRH
ILAEMAKCSPPPTLSLSKYAPLILIMKVHPNKVYSLIGSGGKKVKSIIEESGVEAIDMQD
DGTVKIMATEIASLERAKAIISGLTMVPAVGDIYRNCEIKSMAPYGAFVEIAPGREGLCH
VSELSAEWLAKPEDAYNIGDRIDVKLIEVNEKGQLRLSVRALLPESESDKDSQKQPPTTG
DSTKSSPRKYVNPLLKDRAATGASGEELVWKKKDVRKSSGGDKPMKSSSSSNEEDRGSLV
NGEATIS
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgagtcccagcaacgcgcttcacagcactccacacttctggcctattcgccgg
agcaggcttcttctccgtccccggaacttccctcgtttccactccggcggaggaaacttc
tgctcgctctctctcctctccgcaagaagtggccctagtagatttagaatcagagctcta
gctggaccagaagcttccgaggacggtggtctggcgtttcctaaccacgtttccgtcaaa
atccctttcggaaacagagagattttggttgagactggtcttatggggagacaagcaagt
tctgcagttactgtgacagatggagaaactattgtctacacatcagtttgtctagctgat
gtccctagtgagccttcagattttctccccctttatgttcactatcaggagcgtttctca
gctgttggccgaactagtggtggattttttaagcgagaagggagaaccaaagatcatgag
gttctgatttgtaggttgattgatagacctctacgccccactatgcccaaaggtttctac
aacgaaactcagatattatcctgggttttgagctacgatgggttacacgcacctgatgct
ttagctgttacatctgctggaatagctgtagctctttcagaagtgccaaactcaaaggca
gttgcaggagttagagtgggtcttattgggggcgagtttatcgtcaacccaacggtgaag
gagatggaagaatcacagctagatttgtttctagcgggaacagattctgcaattttaact
atagagggatatagtaattttcttcctgaggaaatgttggtcaaagctgttaaagttgga
caggatgctgtacaagctacatgcactgctattgaagctttagcaaagaaatatggaaag
cccaagatggttgatgctatcagattaccacctcctgagctttacaagcatgtgaaagaa
cttgctggtgaggaattgagcaaagcgctacagattaagagcaaaatagcaagaaggaaa
gcaataacgtccctggaagaaaaggttttgacgatactgactgagaagggatatgtgatt
gatgaggcagcatttggaaccacagaagcacaaccggaactgttggaggatgaagacgag
gacgaggaagttgttcctgaaggtgaggtggaccaaggcgatgttcacataaggcccatc
cctaggaaacctattcctttgctattttcagaagtagatgtgaagctggtcttcaaagaa
gtatcgtcaaagctcctgaggaggcgaattgttgagggaggtaaaagaagtgatggtcga
actccggatgggatccggccaattaactctagatgtggtctgcttccaagagcacatggc
agctctcttttcacacgtggtgaaacacaggcactggcagttgttactcttggtgataaa
cagatggcacagagaattgacaaccttgagggttctgatgaatacaagaggttttatctt
cagtacacttttcctccatcgtcagttggtgaagttggacgaattggagcaccgggtaga
agagaaataggtcatgggacactagcagagcgagcattggagactatattacctagtgat
gatgattttccttacactatacgtgttgagagtacaatacttgaaagcaatggttcttca
agcatggcatctgtttgtggcggttgcttggctttgcaagatgctggagttccagtaaaa
tgctctgttgctggcatagcaatgggaatggtttgggatacagaagagtttggcggtgat
ggatctcctcttatcctttctgacatcactggagctgaagatgcatctggtgatatggac
tttaaggttgctgggaatgaggatggtgttaccgcgtttcagatggacattaaggtagga
ggaatcactttggagataatggaaaaggctctgatacaggcaaaagctgggcgtcgccat
attcttgctgaaatggcaaagtgctcgccgcctcctacgttgagtctctcaaaatacgct
ccattgatacttattatgaaggtccatccaaacaaagtatactctcttattggttctggt
gggaagaaagtaaagagcatcattgaagaatcaggagttgaagccattgatatgcaagat
gatggaactgtcaaaattatggcaaccgagatagctagtctggagagggcgaaagcgatt
atcagtggattgacaatggttccagctgttggtgatatctataggaattgtgaaatcaaa
tcaatggctccttatggtgcatttgtagagattgcacctgggagagaaggactttgccat
gtcagcgagctaagtgctgaatggcttgcaaaaccagaagatgcctataatataggagac
cgcattgatgtcaaactaatagaggtgaatgaaaaaggtcagcttcggcttagtgtacga
gctttacttccggaatcagagtcggacaaagacagccagaaacaaccaccaacaactggt
gattctaccaagagttcaccaaggaagtatgtaaatcctttgttgaaggaccgtgcagcg
acaggagcatctggggaagaacttgtctggaagaagaaagatgtcaggaaatcatcaggt
ggtgacaagccaatgaaaagcagtagcagtagcaacgaagaagatagaggcagcttagtc
aatggtgaagctacaatcagctag
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