Brassica napus (rape): 125584476
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Entry
125584476 CDS
T04128
Name
(RefSeq) rhamnogalacturonate lyase-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
125584476
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
125584476
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
Pam16
Motif
Other DBs
NCBI-GeneID:
125584476
NCBI-ProteinID:
XP_048608928
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All DBs
Position
C3:60045405..60049236
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AA seq
682 aa
AA seq
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MSPQKSYSYIIFDLEIWKKKMISQKTIASWMICFLLLLLLPIAFSEPTRNLKGTSARAPT
VQQIRNKEVIVDNGIVRVTFSNPEGLITGIKYNEIGNVLNPYLRARGYWDITWQRENNIL
PTLDRIEGTNFRIITQSEEQVEISFSRTWNGGSDHIPLNVDKRYIIRTNTSGIYTYGIFE
RQPEWPEVEMGLIRVAFKLNPDRFHYMVVADNRQRQMPTDDDRDIHSGRAKPLAYKEAVQ
LTNPHNQMFKNQVDDKYQYSCEVKDNKVHGWISTKSNVGFWLISPSGEYRSGGPVKQELT
SHVGPTTLTTFISQHYVGQDMETRYKTGEAWKKVLGPVFIYLNSDSTGNNLQHSLWEDAK
RQTEQEVEAWPYGFVASSDFPTRQERGTITGRLFVNDRFLAPAGYAYIGLAPPGEAGSWQ
TNTKGYQFWTQTNETGYFTISNVRPGTYNLYGWVHGFIGDFKYQNLVNVAAGSEICLDRV
VFQPPRNGPTLWEIGVPDRTAREYFVPEPYQNTMNPLYLNHTDKFRQYGLWQRYTELYPN
HDLVYTVGVSNYSQDWFYAHVTRNIYGSTYVPTTWQIVFELPYVNWRGSYTLQLALASAA
RANLQVRFNNEYSRPLFSEGIGRDNAIARHGIHGAYHLYSIDVPGRLLRTGTNTIYLRQS
KAVGAFEGLMYDYIRLEEPSTA
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtctccacaaaaatcttattcttacattatattcgatcttgagatttggaaaaagaag
atgatttcgcagaagacgatagcttcgtggatgatatgtttccttctgttgcttcttctt
ccgatagctttttctgagccgacaagaaacttaaagggaacaagtgcaagagctccaaca
gtgcagcagataagaaacaaggaggtgatagtggacaatggaattgtgagagtgactttc
tcgaatcctgaaggattaataactgggatcaaatacaatgaaatcggcaatgttcttaat
ccatatctccgagctcgagggtactgggacataacatggcaaagagaaaacaacattctc
ccaacgttggatagaatcgaaggaaccaactttagaatcataactcaaagcgaagaacaa
gtggagatttctttctcccgaacatggaatggtggttctgatcatattccattaaacgta
gacaagaggtatattatacgtacaaatacttcaggaatctacacttatggaatttttgag
agacaacccgaatggccagaagtggagatgggtctaattcgagtcgcctttaaactcaac
cctgatagatttcattacatggtggtggcagataatcggcaaagacaaatgccaacagac
gatgaccgtgacatccacagtggccgtgccaagccccttgcttacaaagaggctgtacaa
ttgactaatcctcacaaccaaatgttcaaaaaccaggtggatgataaataccagtactca
tgtgaggtcaaggacaacaaggtgcatggttggatatcgaccaagtccaatgttggtttc
tggcttatctcaccgagcggtgaataccgctctggtggaccggtcaaacaggagctcacg
tctcacgtcggtcccacgacccttacgacctttataagccagcattatgttggtcaggac
atggagacaaggtacaaaactggtgaagcgtggaaaaaggtcttgggacctgtattcatt
tacttaaactctgattctaccggcaataatctacaacattcgttatgggaagatgctaaa
cgacagaccgaacaagaagttgaagcatggccgtacggttttgtagcgtcctctgacttt
cctactcgtcaagaaagaggaaccattaccggtcgactctttgtcaacgacaggttcttg
gctccggcaggatatgcatacatcggtttagcaccgccaggagaagctggttcttggcaa
acaaatactaagggataccaattttggacacagacgaatgaaaccggctatttcaccatt
tctaacgttagaccgggaacgtataatctatacggatgggttcatggttttatcggagac
ttcaaataccaaaacctagttaacgtagctgcaggttcagagatatgtcttgatagagtt
gtgttccagcctcctaggaatggtccaacgttatgggagattggtgtaccggaccgaacc
gccagagaatactttgtaccggaaccataccagaatacaatgaaccccttatacttaaac
cacactgacaagtttaggcagtatgggttatggcaacgttacacggagttatatccaaac
catgatctcgtctacacagttggagttagtaactatagtcaagactggttctacgctcac
gtcacaaggaacatttatggttcgacctatgtaccaacgacatggcagattgtttttgaa
cttccatatgtgaactggcgaggtagctacacattgcaactagctttagcttcggctgca
cgggctaacttacaagtacggttcaacaacgaatactctaggccattgttctctgagggt
atcggaagagataatgctatagcaagacatggaatccatggagcctaccatctttatagc
attgatgtacctggaaggttactaagaaccgggaccaacacaatctatctacgtcagtct
aaagcggtgggagcgtttgaaggtcttatgtatgattacattcgtcttgaagagccttct
acagcttaa
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