Brassica napus (rape): 125585505
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Entry
125585505 CDS
T04128
Name
(RefSeq) probable pectate lyase 15 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125585505
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
125585505
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
125585505
NCBI-ProteinID:
XP_048610663
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Position
C4:complement(40181690..40185783)
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AA seq
369 aa
AA seq
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MSEHNITARRKLGFFSCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAVGGRDGRFY
VVTDPTDEDVINPKPGTLRHAVIQDEPLWIVFKRDMVIELKQELIMNSFKTIDGRGANVH
IANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIFQSSHIW
IDHNSLSHCADGLVDAVMGSTAITVSNNHFTHHNEVMLLGHSDSYTKDKLMQVTIAYNHF
GEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYAAPKNPFAKEVTKR
VETDASEWQKWNWRSEGDLLLNGAFFKASGAEASASYGRASSLAAKPSSMVHTITSTAGA
LGCRRGRPC
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacataacatcacagcaaggaggaagcttggatttttctcatgtggaaccggt
aacccaatcgatgactgttggcgttgtgaccgtaactggcataagaaccgcaaacgcctc
gccgattgtggtatcggttttggacgcaacgctgttggtggtcgtgatggacgcttctac
gttgtcactgaccccactgacgaagacgttattaaccccaaaccaggaactcttcgccat
gcggttatccaagatgagcctctgtggattgtgttcaagagagatatggtgatagagctg
aaacaagagctgattatgaacagtttcaagaccattgatggtcgtggtgctaatgtccat
atagccaacggtgcttgcatcactatccagtttatcaccaacgtcatcatccatggtctt
cacattcatgattgcaagcctactggaaacgccatggttagaagctcgccatctcacttt
ggctggagaacaatggctgatggtgatgcagtctctatctttcaatcatctcatatctgg
attgatcataactctctctctcactgtgctgatggccttgtggatgctgtcatgggttct
actgctattaccgtttccaataaccactttacacaccacaatgaggtcatgttgctcggc
cacagtgattcctacacaaaagacaagctgatgcaagtgaccattgcttacaaccatttt
ggagaaggattggttcagagaatgccaaggtgcagacatgggtatttccatgtggtcaac
aacgactacacacactgggagatgtacgcaattggtgggagtgcagatccaaccatcaac
agtcaaggaaacagatatgctgctcctaagaaccctttcgccaaagaggtgacgaaaaga
gtagagacagatgcaagtgagtggcagaagtggaattggagatcagaaggagatctgcta
ctgaatggagcattcttcaaggcatcaggagcagaagcatcagctagctatggacgagcc
tcaagcttagcagctaaaccatcatcaatggtccacaccataacctctactgcaggagca
ctaggttgccgcagaggcagaccttgttag
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