Brassica napus (rape): 125587951
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Entry
125587951 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 50-like
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
125587951
03009 Ribosome biogenesis [BR:
bna03009
]
125587951
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125587951
Spliceosome [BR:
bna03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125587951
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
Helicases
125587951
Pre-60S particles
125587951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
PRIMA1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
125587951
NCBI-ProteinID:
XP_048615345
LinkDB
All DBs
Position
C5:complement(53692876..53696164)
Genome browser
AA seq
755 aa
AA seq
DB search
MLARAPPPSVTFPARNKVCNRREIVRLFRNGGGVITRAGFTRRPLEASCSNEVVSDSTDD
GFIVIKAEHRETELYPPPPPPPSIPPSESSRRNGSRSRGVTASFGRLKAQKVKALVGKVT
QKKQQVSRNEEEEDEDDDIFEDEEFGGSSILDLMRKKLAMKAIPSSGKSSEVKRFSRVRE
SRELRDTDRSQTNERDSNGYAAANSRGRGDRPSNAKNLDTFKGSDRAAGEFANPRKFSDN
ERAGSRSSYSKDSSAANSRGREDRRFVNKESDTYQRRDRATTDEFSDARYFNDNERAGSH
YSYSRGGAGNSRGWGDRRSVVYARDMEDWRERGNKTKSTRETGFFSRKSFAEVGCSEGMM
KALKENNFDRPAHIQALAFAPVVDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGLSK
SSSGCPRVIVLVPTAELASQVLANCRLISKSGVPFRSMVVTGGFKQRTQLENLEQGVDVL
IATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDEEFESALQNLISSSPVTAQYLFVTA
TLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEVLVDCSGDDYAEKTPETAFQNKKAAL
LQIIEENPVAKTIIFCNKIETCRKVENIFKRLDRNERQLHVLPFHAALAQGARLTNMEEF
TSSHPEDHSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGEGKAF
VFVVGKQVTLARRIIERNQKGHPVHDVPNAYEFTT
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgttggcgagagctccacctccgtcagttacttttccggcgaggaataaagtttgtaat
cggagagagatcgtgcggctgtttcgcaacggaggaggagtgataacgagagccggtttc
actcgtcggccactggaggcttcatgctcgaatgaggtcgttagcgactccaccgacgat
ggattcatcgtaatcaaagcggaacaccgcgagacggagctctatcctccgcctcctcct
ccgccttcgattccgccgtcagaatcttcgagaagaaatggttcgcgttcgagaggagta
accgcgagtttcgggaggctaaaggcgcagaaagtgaaggctctcgttggtaaggtaacg
cagaagaagcagcaagtgagtcgtaatgaggaagaagaagacgaggatgatgatatattt
gaggatgaagagtttggtggatcatcaattcttgatttgatgaggaagaagttggctatg
aaggctattcctagttcaggaaaatcttcagaggtgaaaagattcagcagagtgcgggaa
tctagagagctaagagatacagatagatctcagactaatgagagagattcaaacggttat
gctgctgctaactccaggggtagaggagataggccttcgaatgcgaaaaatttagataca
ttcaaggggagtgacagagctgctggtgagtttgcaaaccctcggaagtttagtgataac
gagagagcaggatcaaggagttcatattcaaaagattcctctgctgctaattctaggggt
agagaagataggcgttttgttaacaaagagtcagatacatatcagagacgtgatagagct
actacggatgagttttcagatgctcggtatttcaatgataatgagagagcagggtcgcat
tattcatattcaagaggcggtgctggtaactccaggggttggggtgataggcgttctgtt
gtatacgcaagagatatggaggattggagagagagagggaataaaaccaagtctactagg
gaaaccggcttttttagccgcaaaagttttgcagaggttggatgtagtgagggtatgatg
aaggccttaaaggagaataattttgatcgaccggctcatattcaggctctggcttttgcg
ccagttgttgatggaaagagttgtatcatagctgaccaaagtggatcaggcaagacactg
gcatatcttgtacctgttatccagcgtctcagggaagaggaacttcaaggactgagcaaa
tcgtcttctggttgtcctcgtgtgattgttctggtaccaaccgcagagttggcctcccag
gttcttgccaactgtagattaatatcaaagtctggggtcccgttccgttccatggtagtg
actggtggtttcaaacaacgaacccagctcgaaaatttagagcaaggtgtggacgttttg
attgcaacaccagggcgtttcacgtaccttatgaatgaaggaattttggggctgtcaaat
ttgagatgtgccatattagatgaggtggatatactctttggcgacgaggagtttgagtca
gccctgcagaatctgatcagttcctcccctgtgactgcgcagtatctgtttgttacagca
accttgcccctcgagatatacaacaaacttgttgaagttttccctgattgtgaagttgta
atgggacctcgcgtgcaccgtgttagcaatgccctcgaagaggttcttgttgactgcagt
ggagatgattatgcagagaaaactcctgagactgcttttcagaacaagaaagcggctctc
cttcagattatcgaggaaaaccctgttgccaagactatcatcttctgcaataagattgag
acatgtaggaaagttgagaatatattcaagcggcttgatagaaacgaaaggcagctgcac
gtcctaccgtttcacgcagcactcgcacaaggggcaaggcttacaaacatggaagaattc
acctcgtctcatcccgaagatcattcactgtttctggtctgcacggatagagcttctcgt
gggatagatttctccggtgttgatcatgtggtgctgtttgattttccgcgtgacccgagt
gaatacgtaagacgtgttggaagaacagcgagaggtgctagaggagaaggaaaggctttc
gtctttgtagtggggaaacaagtaacgttggcaaggaggatcattgagaggaaccagaag
ggtcatccggttcatgatgtcccaaacgcttacgagttcacaacctga
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