Brassica napus (rape): 125589013
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Entry
125589013 CDS
T04128
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125589013
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
125589013
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
125589013
NCBI-ProteinID:
XP_048617064
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Position
C6:40511124..40513005
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AA seq
406 aa
AA seq
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MTLLHLSLSLFSCLFLVLAPTYVASSHVSDPELVVQEVNQQINASRRNLGVLSCGTGNPI
DDCWRCDPKWENNRQRLADCAIGFGKRAIGGRDGKIYVVTDPSDKDAVNPKPGTLRHAVI
QEEPLWIIFARDMVIKLKEELIMNSFKTIDGRGANAHIAGGACITVQYVTNIIIHGISIH
DCKKRGNAYVRDSPSHYGWRTASDGDAVSIFGGSHVWVDHCSLSNCEDGLVDVIHGSTAI
TISNNYLTHHDKVMLLGHSDSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDY
THWGMYAIGGSAAPTINSQGNRFLAPNNKVFKEVTKYEDAPQSKWKNWNWRSEGDLFLNG
AFFTPSGGRASSMYAKASSLSARPSSLVASVTGNAGALSCKKGSRC
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgacacttcttcacttgtctctctccctcttctcatgtctcttccttgtcctagctccg
acttacgttgcttcctctcatgtctccgaccctgaactcgtagttcaagaagttaaccaa
cagataaatgcttctaggaggaatcttggtgtcctctcatgtgggaccggaaatccaata
gacgactgctggagatgcgaccccaaatgggagaacaaccgacaacgactagctgattgc
gccatcgggtttggcaaacgcgcaataggcggccgtgacggcaaaatatacgtggtgacc
gacccgagcgacaaagacgcggttaaccctaaacccggaacgctaagacacgctgtgatc
caggaagaaccgctatggatcatcttcgcacgtgacatggtcataaagctgaaagaagag
ctgatcatgaactcgttcaagaccatagatggacgtggagcgaacgcccacatcgcaggc
ggcgcgtgcatcactgtccagtacgtgaccaacatcatcattcacggcataagcatccac
gactgcaagaagagaggcaatgcttacgtcagagactcaccgtcgcattatggatggagg
actgcatctgatggtgacgccgtctctatttttggtggatcccacgtgtgggtagaccat
tgctcgttgtcgaactgcgaggacggtctggtcgacgtgatccatgggtcgacggccatt
acgatctctaataactacttgacgcaccacgacaaagtgatgcttttgggacacagtgat
tcgtacacgagagacaagaacatgcaagtcaccattgcttttaatcattttggtgaaggg
cttgttcagagaatgcccagatgtaggcatggatattttcatgtggtaaataacgattat
acgcattggggaatgtatgcaattggtgggagtgcggctccaacgattaacagtcaaggc
aatagatttctcgctccaaataataaagtctttaaagaggtgactaaatacgaagatgca
ccacaaagcaaatggaagaattggaattggagatcagaaggcgacttgttcctaaacggt
gcgttttttacgccctcaggtggaagagcttcttcaatgtatgcaaaagcttctagtctg
tccgctagaccatcctcgttggtagcttccgtcacgggcaatgctggtgctctctcttgt
aagaaaggatctcgatgttaa
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