Brassica napus (rape): 125592305
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Entry
125592305 CDS
T04128
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125592305
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
125592305
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Hyphal_reg_CWP
Motif
Other DBs
NCBI-GeneID:
125592305
NCBI-ProteinID:
XP_048623062
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Position
C9:63621218..63628222
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AA seq
527 aa
AA seq
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MFIMVAHERFHILQKPTCIWIIWVCLLVSLSIHGRASYSYASSATISTSSSNLSLPHQHP
FPEDIVLNVQRKLNDSLHRRNLLTYQQDDGDTTSSSPIPSCITGNPIDDCWRCDPNWSQN
RQRLADCSIGFGQGTLGGKGGRFYLVTDSSSDDAANPIPGTLRHAVIQPEPLWIVFSGDM
GIKLRHELIVGSYKTIDGRGANVQITGHGCLTIQQVSHVIIHNVHVHHCKPSGNTLVASS
PTHVGFRGVSDGDGISVSASHHIWVDHCSLGYCSDGLIDVILASTAVTISNNYFHHHDEV
MLLGHDDRYTADTGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSAN
PTINSQGNRYTAPINPNAKEVTKRVDTNEKHWAKWNWRTDGDVMVNGAFFVPSGDGASLA
YARATSLQAKAAGFIDQLTVNAGVFGDPSGRNGQGGVFPGITDGGGTITRGYSKGGPGGG
GSDSDGGLFSMIFGSNTNAASAALRPGQVWSILFTILLNWYFSNHRR
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgtttataatggtggctcatgagaggttccatattcttcaaaaaccaacatgcatttgg
ataatctgggtctgcctcttggtttctctctctatccatggaagagcatcttattcatat
gcatcatcagcaacaatctcaacatcttcttccaatctttctctcccacaccaacaccca
ttccctgaagatattgttcttaatgtccaaaggaagctcaacgattctctccacagaaga
aacctcctcacttaccaacaagacgacggcgacacgacgtcgtcgtcgccaataccttcc
tgcatcaccggcaacccaatcgacgactgctggcgctgcgacccaaactggtctcaaaac
cgccagcgcctcgccgactgctcgatcggcttcggacaaggcacgctcggcggcaaaggc
ggccgcttttacctcgtcaccgactcctcctccgacgacgcggcgaacccgatccccggg
accctccgccacgccgtgatccagcctgagcctctctggatcgtcttctccggcgacatg
gggatcaaactcaggcacgagctcatcgtcggaagctacaagaccatcgacggacgcggc
gcgaacgtgcagatcaccggccacggatgcctcacgatccagcaggtgagccacgtcatc
atccacaacgtccacgttcaccactgcaaaccctcggggaacactctggtcgcttcgtcg
ccgacgcacgtcgggttcagaggagtctccgacggagacgggatctccgtctccgcttcg
catcacatttgggttgatcactgctctcttgggtactgttccgacggactcatcgacgtc
atccttgcgtcaacggccgttacgatctccaacaactactttcatcaccacgacgaagtc
atgctcttaggccatgacgaccggtatacggcggacacggggatgcaagtgacgattgcg
ttcaaccatttcggagaggggctcgtgcagaggatgccgcggtgtagacatggttacatt
catgtggtgaataatgatttcactgcatgggagatgtatgcaattggtggaagtgctaac
cctacgatcaatagtcagggtaatcgttacaccgcacccattaatcccaatgccaaagag
gtgacgaagcgagtggacacaaacgagaaacactgggcgaaatggaactggaggacggac
ggagacgttatggttaacggagcgtttttcgtgccgtcaggtgatggagccagtctagcg
tacgcccgagccactagtcttcaggccaaagccgctggattcattgaccagctaacggtc
aatgccggcgttttcggcgatcccagtgggagaaacggccaaggaggagtttttcccgga
atcactgacggtggtgggaccatcacacgcggctacagtaaaggtggacccggcggtggt
ggcagcgacagcgatggtggccttttctcaatgatattcggtagtaatacaaatgcggcg
tcggcagctttgaggccgggacaagtctggtcgattttgttcactatcttattaaattgg
tatttttcaaaccataggagatga
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