Brassica napus (rape): 125593272
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Entry
125593272 CDS
T04128
Name
(RefSeq) probable pectate lyase 20
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125593272
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
125593272
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
DUF1565
Motif
Other DBs
NCBI-GeneID:
125593272
NCBI-ProteinID:
XP_048625620
LinkDB
All DBs
AA seq
418 aa
AA seq
DB search
MGITQVLVLFASALLLSSMLFTGVDSTRSNETWHEHAVDNPDEVAAMVDMSTRNSTERRR
LGYFSCSTGNPIDDCWRCDRKWKLRRKHLADCSIGFGRNAIGGRDGRYYVVSDPGDDNPV
NPTPGTLRHAVIQDEPLWIVFKRDMVITLREELIMNSFKTIDGRGANVHIANGACVTIQY
VTNIIIHGVHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCAD
GLIDAVMSSTAITISNNYFTHHNEVMLLGHSDTYTRDKVMQVTIAYNHFGEGLIQRMPRC
RHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLAPSNRFAKEVTKRDYAGEWQWKHW
NWRSEGDLFLNGAFFTRSGSGLGASYARASSLAAKSSSLVGVITSNAGALNCRAGRRC
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgggtatcacccaagtacttgtcctcttcgcttctgcattactcctatcatcaatgctc
ttcactggcgtcgattccaccaggtctaatgaaacatggcatgaacatgcagttgataat
ccagacgaagtagctgccatggtggacatgagcacccgtaacagcacagagcggagacga
ctcggctacttctcctgctccaccggcaaccccatcgacgactgctggcgctgcgatcgc
aaatggaaactccgccgcaagcacctcgccgactgctcgatcggattcggccgcaacgcg
atcggcggccgcgacggccgctactacgtcgtctccgacccgggcgacgacaacccggtg
aacccgaccccggggaccctccgccacgccgtgatccaggacgagccgctctggatcgtc
ttcaagcgcgacatggtcataaccctgagagaagagctcatcatgaacagcttcaagacc
atcgacggccgcggcgccaacgtgcacatcgccaacggcgcgtgcgtcacgatccagtac
gtgacgaacatcatcatccacggggtccatatacatgactgcaagccgacgggtaacgcg
atggtgagaagctccccgtcgcattacgggtggaggacgatggcggatggcgatgggatc
tcgatctttgggtcgagtcatatttggattgatcataactcgctttcgagttgtgctgat
gggcttattgatgctgtgatgtcttccacggctattactatctccaataattacttcacc
caccacaacgaggttatgttgctggggcatagtgacacctacacaagggacaaagtgatg
caggttactattgcttacaaccattttggtgagggccttatccagaggatgccaaggtgt
aggcatggatatttccatgtagttaacaatgactacacgcactgggaaatgtatgcaatt
ggtggcagtgcgagtcccaccatcaacagccagggaaacagatatcttgctccgagcaac
cggtttgctaaagaggtgacaaagagagactatgcaggggagtggcaatggaagcactgg
aactggagatcagaaggagaccttttcctaaacggtgctttcttcacacgttctggatca
gggcttggagctagttacgctagagcttcaagtttagcagccaaatcatcttcccttgtc
ggcgtcatcacctccaatgccggtgctcttaattgcagagctggtcgccggtgttaa
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