Brassica napus (rape): 125606449
Help
Entry
125606449 CDS
T04128
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125606449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
125606449
03012 Translation factors [BR:
bna03012
]
125606449
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125606449
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125606449
Translation factors [BR:
bna03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125606449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
Rad17
ABC_tran
T2SSE
NACHT
Motif
Other DBs
NCBI-GeneID:
125606449
NCBI-ProteinID:
XP_048631474
LinkDB
All DBs
Position
A3:8576325..8580928
Genome browser
AA seq
1030 aa
AA seq
DB search
MHLASLSPLSTLRFLLPLSPKLFPLPSLFRISAMGPNSQGGRRGGGFSSNRGGGRRGGRG
GGGGGGRGGGGGRGEQRWWDPVWRAERLRQQQAEMEVFDENEWWNKIEQMKTGGEQEMVI
KRNFSRGDQQTLGDMAYQMGLYFHAYNKGKALVLSKVPLPDYRADLDDRHGSTQKEIQMS
SETERKLGSLLKTTQQVGSTSGSNDQQDRTSAIGVKKSDSASKFSDSHEKEKFSVALKDR
QDKLKATESVKALHAFREKLPAFKMKQDFLTSVSENQVLVVSGETGCGKTTQLPQFILEE
EISSLRGADCNIICTQPRRISAISVASRISAERGEPIGESVGYQIRLESKRSDQTRLLFC
TTGVLLRRLIEDPNLSGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLVLMSATIN
ADMFSTYFGNAPTMHIPGFTFPVTELFLEDVLEKSRYTIKPSDSGNYQGGSRGRRRDSES
KKDDLSTLFEDIDINVHYKSYSSATRLSLEAWSGAQIDLELVEATIEHICRREGDGAILV
FLTGWDEISKLLENIKGNRLLGESSKFLVLPLHGSMPTVNQREIFDRPPLNKRKIVLATN
IAESSITIDDVVYVVDCGKAKETSYDALNKVACLLPSWISKASAHQRRGRAGRVQAGVCY
RLYPKVIYDAFPQYQLPEIIRTPLQELCLHIKSLQVGSIGSFLAKALQPPDALAVENAIE
LLKTIGALDDIEELTPLGRHLCTLPVDPNIGKMLLIGAIFQCVNPALTIASALAYRSPFV
LPLNRKEEADEAKRYFAGDSCSDHIALVKAFEGYRDAKRGGHERDFCWENFLSPLTLKMM
EDMRNQFLDLLSDIGFVDKSRGPNVYNQYSQDMEMVSAVLCAGLYPNVVQCKRRGKRTAF
YTKELGKVDIHPGSVNARVNLFSLPYLVYSEKVKTTSVYIRDSTNISDYALLMFGGSLMP
SQTGEGIEMLGGYLHFSASKNVLELIQRLRGEVDKLLNRKIEDPSLDITVEGKGVVSAVV
ELLRSRSIRY
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgcacctggcatctctctcgcctctttccacacttcgcttcctccttccattatctccc
aaactctttcctcttccttctctcttccgaatctctgccatgggtcctaactctcagggt
ggtcgccgaggcggaggtttctcctcaaatcgcggtggaggtcgccgtggtggacgcgga
ggcggcggcggtggtggacgcggcggaggaggtggccgtggagaacagagatggtgggat
ccggtgtggagagccgagcgtttacgccagcaacaggctgagatggaggtttttgatgag
aatgaatggtggaacaagattgagcagatgaaaactggaggcgaacaagagatggtgata
aagcgtaatttcagccgtggtgatcagcaaacactcggtgatatggcttatcagatgggt
ctttacttccatgcttacaataaggggaaggctcttgtacttagcaaagttcctttgcca
gattatagagcagatcttgatgaccgacatggttccactcagaaggagattcaaatgtct
tcagagacagagagaaaacttggaagtcttttgaaaacaacacaacaagtaggctctact
tcaggatctaacgaccaacaggatcgtacatcagctattggcgtgaagaaatctgattct
gcttccaaattttctgattctcatgagaaagaaaaattcagtgttgcactcaaggacagg
caggataaactaaaggcaactgaaagtgtaaaagcacttcatgctttcagagaaaagcta
cctgctttcaaaatgaaacaagacttccttacctctgtttcggaaaatcaggtactggta
gtttcaggagagacaggatgtggtaaaacaacacaacttcctcagtttattttggaggag
gagatatcatccctgagaggtgctgactgcaacataatatgcacacaacctagacgtata
tctgccatatccgtggcatctcgtatatctgctgaaagaggtgaacccatcggtgaatct
gtgggttaccagatccgtcttgaatcaaagcgttctgaccaaacacggttgctgttttgc
acaactggtgttttactaagacggctaattgaggatcctaatctaagcggcgtaagccat
ttgctagtggatgaaattcacgagagaggcatgaacgaggacttcttactaatcatacta
agggatcttcttcctcgacgtcctgatttgcgtcttgttctgatgagtgctactattaac
gctgacatgttctcaacgtattttgggaacgctccaactatgcatatccctgggttcaca
ttccctgtgacagagttattcctagaagatgtgcttgagaaaagtcgctatactattaag
ccgtcagactcagggaattatcaaggtggctctagaggtagaagaagagactcagaatcc
aagaaagatgacctgtctacactctttgaggatattgacatcaatgttcactacaaaagt
tatagctcagccacaagactttctctcgaagcatggtctggtgcacagattgatttggag
ctggtggaggcaacaatagaacatatttgccgtcgtgaaggtgatggagccattcttgtt
ttcctcactggctgggatgagatttcgaagctgcttgaaaatatcaaagggaacaggtta
cttggagagtctagcaaattcttagttcttcctcttcatggttcaatgcctactgttaac
caacgcgaaatctttgaccgtccacctcttaacaaacggaagatagttttggctacaaac
attgctgagagcagtatcacaatcgatgatgttgtatacgttgtggactgcggtaaagca
aaggaaacaagctacgatgctttgaacaaagtggcttgtctcttaccatcatggatctca
aaggcttcagctcatcagagacgaggacgtgcaggacgtgtccaagctggagtgtgttat
aggctttacccaaaagttatttacgatgctttccctcagtatcagttaccagagatcata
cggactccattgcaagagctgtgcctgcacatcaaaagcttgcaggttggatccatagga
tctttcttggcgaaggcgcttcagccgcctgatgctctcgctgttgagaatgctattgag
cttctcaaaacaattggggctttagatgatatagaagagctgacaccccttggtcgtcat
ctttgcactctacctgttgaccctaacataggaaagatgcttctcattggagctatcttc
cagtgtgtcaaccctgcgctgacaatagcctctgctctggcgtaccgtagtccctttgtc
ttaccgctaaataggaaagaggaagctgatgaagccaaaagatactttgctggtgactcc
tgcagtgatcacattgctttagttaaggcctttgaagggtatagagacgcaaagcgtggt
ggacacgaaagagatttttgctgggagaactttctttcccctctaaccctaaagatgatg
gaggatatgaggaaccagtttcttgatcttctttcagatatagggtttgttgacaaatca
agaggaccaaacgtatacaatcagtacagccaagacatggagatggtaagcgcggttctg
tgtgcggggctgtacccaaacgttgtgcaatgcaaaagaagagggaagcgcactgccttc
tacactaaagagttgggtaaagttgatatccaccctggatcagtcaatgctagggtgaat
ctcttctcgttgccatacttggtttacagcgagaaggtgaagacgacaagtgtttatatc
cgggactcgacgaacatatcggattacgcactgcttatgtttggtgggagtcttatgcca
agccagaccggggaaggtattgagatgttgggagggtatctccatttctctgcctcgaag
aacgtcttggaactgatacagaggttgaggggagaggtggataagctgctgaataggaag
atagaggatccgagtttggacataacggtggaggggaaaggtgtggtttcggctgtagtg
gagctgttgcgtagccgtagcatcagatattag
DBGET
integrated database retrieval system
