Brassica napus (rape): 125606868
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Entry
125606868 CDS
T04128
Name
(RefSeq) probable polygalacturonase At2g43860
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125606868
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
125606868
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
LysM3_LYK4_5
Motif
Other DBs
NCBI-GeneID:
125606868
NCBI-ProteinID:
XP_048631779
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Position
A3:complement(10964212..10968440)
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AA seq
409 aa
AA seq
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MVYKTSCLLLPLALVFLDFIITSSLAKPIPTTFINVLTYGAKPDGSTDSTKAFLAAWQVA
CASVNPTTITVPKGRFLVGNLVFQGKKCTDTPISIRIAGSLIAPEDYRIVASSEQWIWFE
SVTDVSIYGGILDAQGSSLWNCKNNGGSNCPTGAKTLLFSGSNNININGLTSINSQKFHI
VINSCNNVNIDGVKVSADANSPNTDGIHIQSSHLVSITNSRIGTGDDCISIGPGSTHVSI
QGIQCGPGHGISIGSLGIAEEEQGVENVTVSNVDFTATSNGVRIKTWAKNSKSFARNIVF
QHISMKMVKNPIIIDQHYCFYKPCPKQESGVEVSNVRYEDIHGTSSTDVAVKLDCSKEKP
CTGIVMDNVNLALQLVNQPAQASCSNANGLANDVVIPFTPCLKRDILMT
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggtttataaaacatcatgtcttcttcttcctttggctctcgtatttcttgatttcatc
ataacctcatcattagccaaacctattccaaccacattcatcaacgtcttaacctacgga
gctaaaccagatggctcaacagactcaaccaaagccttcttagccgcgtggcaagtcgct
tgtgcctctgttaatcctacaactattaccgtaccaaaaggacggttcttggtcggaaac
cttgtattccaaggcaagaaatgtacggatactccaatatctattcgtatagccggatca
ttgattgctcccgaagattatagaattgtcgcaagctcagaacagtggatctggttcgag
agtgtcactgatgtttcaatatatggtggtatacttgacgctcaaggttctagtttgtgg
aattgcaagaacaatggtggtagcaattgccctaccggtgccaagactttgttgtttagt
gggtcgaataacatcaatatcaacggtttaacgtcgataaacagccagaaattccatata
gtaatcaacagttgcaataacgtgaacattgacggcgttaaagtttctgctgatgctaat
agccctaacactgatgggattcacatccaatcatctcacttagttagtatcactaactca
agaattggaaccggagacgattgcatctccataggtccaggatctactcatgtttccata
caaggcatccaatgcggtccaggccacggaatcagtatcggaagtcttgggatagcagag
gaagaacaaggagtggagaatgtgacagtgagtaacgtagatttcacggcaactagtaat
ggagttaggatcaagacatgggcaaaaaacagcaagagtttcgctagaaacatcgttttt
cagcatattagtatgaagatggtcaagaacccgatcatcatagaccaacactattgtttt
tacaaaccttgccctaaacaggagtctggagttgaagtatcaaatgtgagatatgaagat
atacacgggacatcgagtacggatgtggcggttaagttggattgcagtaaggagaaaccc
tgtaccggtattgtaatggacaatgtgaatctcgccttgcaactggtgaaccaaccggct
caggcttcttgtagtaatgcaaacggattagctaatgatgtcgtcatcccgtttactcct
tgtctgaagagagacatacttatgacatga
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