Brassica napus (rape): 125608861
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Entry
125608861 CDS
T04128
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125608861
09122 Translation
03013 Nucleocytoplasmic transport
125608861
03015 mRNA surveillance pathway
125608861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
125608861
03041 Spliceosome [BR:
bna03041
]
125608861
03009 Ribosome biogenesis [BR:
bna03009
]
125608861
03012 Translation factors [BR:
bna03012
]
125608861
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125608861
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125608861
mRNA cycle factors
Stress granule specific factors
125608861
Spliceosome [BR:
bna03041
]
Complex C
Other components
EJC/TREX
125608861
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
Helicases
125608861
Translation factors [BR:
bna03012
]
Eukaryotic type
Initiation factors
eIF-4
125608861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Utp25_C
CMS1
AAA_22
Helicase_RecD
Flavi_DEAD
DUF1198
Motif
Other DBs
NCBI-GeneID:
125608861
NCBI-ProteinID:
XP_048635375
LinkDB
All DBs
Position
A5:complement(21167219..21169675)
Genome browser
AA seq
408 aa
AA seq
DB search
MAEANPGRGGGRRGGGPMDDDKLVFETTEGIEPITNFNDMGIKEDVLRGVYEYGFEKPSA
IQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQIVDTSSREVQALILSPTRELASQTE
KTIQAIGLHANIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRRSLRTRAIKL
LILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKR
DELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLSEKMRTNNFT
VSSMHGDMPQKERDEIMNQFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH
RIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcgaatcctggccgtggaggtggaagaagaggcggcggaccaatggacgac
gacaaactggtcttcgagacgacggaagggatcgagcccatcacgaatttcaacgatatg
gggatcaaggaggacgttctccgcggcgtctacgagtacggtttcgagaagccctccgcg
attcagcagagagcggtcatgccgattctccaaggccgcgatgttatcgctcaggctcag
tccggtaccgggaagacctccatgattgccctctccgtctgccaaatcgttgacacttcg
tctagagaagttcaggcgttgatattgtcgccgacgagggagctggcttcacagacggag
aagactattcaagctattggattgcacgcgaatattcaggcgcatgcttgcattggtggg
aagagcgttggagaggatatcaggaagctggagaatggtgtccatgttgtgtctgggaca
cctggtcgtgtttgtgatatgattaagaggaggagtctgcgtaccagagctattaagctt
ctgattcttgatgagtctgatgagatgcttagcagagggttcaaggaccaaatctatgat
gtttatagatatcttccacctgatcttcaggtttgcttggtttctgcaactcttcctcac
gagattttggagatgacatccaagtttatgactgaaccagtgaagatccttgtgaagcgt
gatgagttgactcttgagggcattaaacaatttttcgttgctgttgagaaagaggagtgg
aagtttgatacactttgtgatctttatgacacacttaccatcactcaagctgttatcttc
tgcaacacaaaaagaaaggtggattggctaagtgagaaaatgaggactaacaacttcaca
gtctcatcgatgcatggtgacatgcctcagaaggagagagacgagatcatgaaccagttt
cggtcaggcgacagtcgtgttctgatcacgacagatgtatgggcacgtgggattgatgtg
cagcaagtttctctagtcataaattatgatctccccaacaaccgtgagctctacatccac
cgtattggacgatctggtcgtttcgggcgtaagggtgttgcgatcaattttgttaaaagc
gacgacataaagatcctccgagacattgagcagtactacagtacccagattgacgagatg
ccaatgaatgtagctgatcttatctaa
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