Brassica napus (rape): 125609510
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Entry
125609510 CDS
T04128
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform-like
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125609510
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
bna01009
]
125609510
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
125609510
03036 Chromosome and associated proteins [BR:
bna03036
]
125609510
Protein phosphatases and associated proteins [BR:
bna01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
125609510
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
125609510
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
125609510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_RIG_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
ComGF
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-GeneID:
125609510
NCBI-ProteinID:
XP_048636949
LinkDB
All DBs
Position
A5:complement(9566184..9569857)
Genome browser
AA seq
494 aa
AA seq
DB search
MNGDDGEIVAASVDPSLPLEWRFSQVFGERSAGEEVQEVDVISAIEFDHSGDHLATGDRG
GRVVLFERSHVINSSGGARRDLEDTDHPLRHPEFRYKTEFQSHDPEFDYLKSLEIEEKIN
KIRWCQTANGTLFLLSTNDKTIKYWKVQDKKIKKVCEVNSDPSKTGAVASSGNPTACLGN
GGVPEAISSLRFPLVTSHESSPVARCRRVYSHAHDYHINSISNNSDGETFISADDLRINL
WNLEISNQSFNIVDVKPEKMEDLSEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALC
DSHSKLFEEPEAAGPKSFFTEIIASVSDIKFAKEGRYLLSRDYMTLKLWDINMDSGPVST
FQVHEYLKPKLCDLYENDSIFDKFECCISGNGLRAATGSYSNMFRVFGVSPGSTESATLE
ASRNPMRRHVPVPSRSSRLGSIARVVGRGSESAGGVDGSSNALDYKTKLLHLAWHPNENS
IACAAGNSLYMYYA
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaacggtgacgatggggagatcgtcgcagcttcggtagatccatctctgcctctggaa
tggagattctctcaggtcttcggtgaacgcagcgctggtgaagaagttcaagaagttgat
gtgatttcagcaatcgagtttgatcattccggcgaccatcttgctaccggggaccgtgga
ggacgtgttgttcttttcgagaggagccatgtcataaacagcagtggaggagctagaagg
gatcttgaagacactgatcacccactgaggcatcctgagtttcgttataaaacagagttt
cagagtcatgaccctgagtttgattatctcaagagtttggagatagaggagaagataaac
aaaattagatggtgtcaaacagccaatggcactctttttctcctgtcgacaaacgataaa
accatcaagtattggaaggttcaagacaagaagatcaagaaagtttgtgaagtaaattca
gatccttcaaaaactggagcggtcgcaagctctggcaatccaaccgcgtgccttgggaac
ggaggagtacctgaagccatctcatcgctgcggttcccactggtaactagccatgagtcg
agccctgtggctagatgtcgaagagtctattctcatgctcatgactatcacatcaattcc
atctcaaataatagtgacggagaaacatttatttcggctgatgatttgcgaataaatctt
tggaatctggagattagcaatcaaagtttcaatattgttgatgttaagcctgagaaaatg
gaagatctatctgaggttatcacatcagcagagtttcatcctacacattgcaatatgtta
gcttatagcagttccaaaggctcaattcgcctgattgatctgcgccaatcagctttatgt
gactcacattccaaattgtttgaggaaccagaggcagcaggtcctaagtcgttcttcact
gagataattgcttcagtgtcagacatcaaatttgcgaaagaaggaagatatctccttagc
cgtgactacatgacactcaagttatgggacatcaacatggattcaggtccggtgtcaact
ttccaggttcatgagtatctgaaaccgaagctctgtgatttatatgaaaatgattctatc
tttgacaagttcgagtgttgtataagtggcaatggattgcgagcagctacaggttcttac
agcaatatgttccgtgtgtttggtgtttccccgggaagtactgagtctgcaactttagaa
gcaagcaggaatcctatgaggaggcatgtcccagttccctcgaggtcatccagactaggc
agtatagcgcgtgttgtaggtagaggatcagagagtgcaggaggagtcgatgggagtagc
aatgctcttgattacaaaacaaagttgctgcatcttgcttggcatccaaatgagaactct
attgcttgtgccgctggaaatagcttgtacatgtactatgcttaa
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