Bacillus cereus NC7401: BCN_0050
Help
Entry
BCN_0050 CDS
T01686
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bnc
Bacillus cereus NC7401
Pathway
bnc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bnc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BCN_0050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bnc03400
]
BCN_0050
Enzymes [BR:
bnc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BCN_0050
DNA repair and recombination proteins [BR:
bnc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BCN_0050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BAL15843
LinkDB
All DBs
Position
54422..57952
Genome browser
AA seq
1176 aa
AA seq
DB search
MIGLLEQFYKNEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNL
YQAQKVHEDLVALLGEKDVWLYPVNELIASELGVASPELKAQRIEVLNRLAAGEHGIIVA
PVAGLRRFLPMKELWKQRQIEISLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI
LDIYPLTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSGI
KHLEEGLTKTMQKLSDDKLKTTVLETVSHEIEMLKNGQSIEQMFKYLSIFYNEPASLIDY
LPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHSFEEFLHHKKRSF
VYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMQLLKTEIDRWNEGHFTTVVLGTDDERV
KKLQHILSDYDIEADIVEGTDILLPGRLQIAVGDLHAGFEMPMQKLVVITEKELFHKKVK
KSQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND
KLYVPIEQIDQVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAEREA
SKGYAYTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIK
GLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTVN
VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAIEDIEELQEEMIDRFGDYPQEVGYLL
QIANIKVLAMKEQIELIKQNKFEVTILFSEQASQNIDGGKLFMLGNSFGRMIGLGMEGSQ
LKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgataggtttattagagcaattttataaaaatgaagagatccaatcggtcattaatgga
ttagaagatggtttaaaagagcaacttgtatcaggtatggcaacctcttctcgttcgtta
ttaatggcggccttatataaaaaaacaaaaaaatcacaacttattgtgacgcataattta
tatcaagcacaaaaagtacatgaagatttagtggcgttacttggtgaaaaagatgtatgg
ctatatccagtaaatgaattgatagcatcagaacttggtgttgcaagcccagaattgaag
gcgcaacgtattgaagtgttaaatcgcttagctgcaggagagcatgggattattgtagca
ccagttgcaggactacgcagatttttaccaatgaaagagttgtggaagcaaaggcaaatc
gaaatcagtctagggcaagagattgatttagatacatttttgcatactttacatcatatt
ggctatgagcgtaagtctatggtagaagctcctggagaatttagtttgcgtgggggaata
ttagatatatatccactaactgaagagttaccatttcgtattgaatttttcgatacagaa
gtcgattctattcgattatttgatgtggatgaacagcgctctcaagataaaaaagaaagt
gttagatttggtccagcaacagagtttttattttcgcaggaagaattgaaatcaggaatt
aagcatcttgaagaaggtctgactaagacgatgcaaaaactttctgatgataagttgaag
actacagtgcttgagacggtaagtcatgaaattgagatgttaaaaaacgggcaaagtata
gaacagatgtttaaatatttatctattttctataacgaacctgctagtctgatagattat
ttaccagaagatggtgttgtgattctagatgagatttcacgtattcaagaaacagcatca
catcttgaaacggaagaggcggaatggtatatatcccttctcggtgagggaacaatcatt
caagatttatccttctctcattcgtttgaagaatttcttcatcataaaaaaagaagtttt
gtatatttaacgttattcttacgtcatatagcacatacacatccgcaaaacattgtgaat
gtgacatgtaaaacaatgcaagatttccatgggcagatgcagttgttgaaaactgaaatt
gatagatggaacgaagggcattttacgactgttgtgttaggtacagatgatgaacgtgtg
aaaaaactacaacatattttaagtgattatgatattgaggcagatattgtagaaggcaca
gatatattattgcctggaaggttacaaattgctgtaggtgatttacatgcaggatttgaa
atgccgatgcaaaagcttgttgtcattactgaaaaagagctttttcataagaaagttaaa
aaatcacaacgtaagcaaaagttatcgaatgctgaacgtattaaaagttattcggaatta
aaagttggggattatgtagttcatgtaaatcatggtataggtaaattcttaggtattgaa
acattagagattaacggtgttcataaagattatttgaatattaaatatcaaggtaatgat
aagttatacgttccaattgaacaaattgaccaagtgcaaaaatatgtaggatctgagggt
aaggatccgaaagtttataaattgggcgggaatgattggaagaaggtcaaaacgaaagtt
gaaaaatctgtacaagacattgcggatgacctaattaaactatatgctgagcgcgaagct
tcaaagggttatgcatatacaccggatacggcagaacaacaagaattcgagtcctctttc
ccgtatcaagagacagaggatcaattacgttctattgaagagattaaaaaggatatggaa
cgtggacgtccgatggataggcttctttgtggtgatgtaggatatggaaagacggaagta
gctattcgtgcggcgtttaaagcaattatggatgaaaaacaagttgcaattttagtgccg
acaacgatccttgcacaacaacactatgaaacaattcgagagcgttttcaagattatcca
atcaatataggattattaagtagattccgtacgagaaagcagcaaaatgaaacaattaaa
ggtttaaaagatggcacagtagatattgtaatcggaacgcaccgtattttatctaaagat
gttacttataaagatttaggtcttcttattattgatgaagaacaaagatttggtgtaacg
cataaagaaaaaattaaacaattaaaagcaaatgttgacgtattaacattaacggcaact
ccgattccgcgtacgctccatatgtctatgcttggtgtgcgtgatttatctgttattgag
acgccgccggaaaatcgtttcccggttcaaacatatgtagtagagtataatccagcatta
atgcgagaagcgatagaacgggagcttgcaagaggtggtcaagtttacttcctatataat
cgtgtagaggatatcgaacgaaaagcagatgaaatttcgatgttagttccagatgcgcgt
gtaacttatgcacatgggaaaatgaacgagagtgaattagagtctgttatgctatcgttt
ttagaaggacagcatgatgttcttgtaagtacaacgattattgagacgggtgtagatatt
ccaaatgtaaatacattaattgtatttgatgcagatcgtatgggattatcgcagttgtat
cagcttcgtgggcgtgttggacgttctaatcgtgttgcatatgcttactttgcatacaaa
cgggataaagtgttatcggaagttgcggagaagcgcctgcaagccattaaggagttcaca
gagcttggatctggtttcaaaattgcgatgcgagatttatcaattcgtggtgctggtaac
ttgttaggagccgaacaacatggatttattgattctgtcggatttgatttatattctcaa
atgttaaaagatgcaattgaacagcgtagaggaacagatggagttgaaaatacagttaat
gttgaaattgatttagaagtagatgcatatttaccggatgcttatatttctgatagtaaa
caaaaaattatgatgtataaacagtttagaggtgtttctgcaattgaggatattgaagag
ttgcaggaagagatgatagatagatttggtgattacccgcaagaagttggttacttattg
caaatcgcaaatattaaagtattagcaatgaaagaacaaattgaattaattaagcaaaat
aaatttgaagtaacaattctgttctcagaacaagcgagtcaaaacattgatggcggaaaa
ttattcatgcttggaaatagttttggacgaatgatcggtctaggaatggaaggatcacaa
ttgaaaatcgtcatgaaaacaaatggcttagagacatcgaagtggttaacaattgctgaa
aatttattaaaaggcttgccagatgtaaaaaaagaagtcataaatgcctaa
DBGET
integrated database retrieval system
