Brevundimonas nasdae: KWG56_03605
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Entry
KWG56_03605 CDS
T07529
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bnd
Brevundimonas nasdae
Pathway
bnd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bnd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KWG56_03605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bnd03019
]
KWG56_03605
03009 Ribosome biogenesis [BR:
bnd03009
]
KWG56_03605
Enzymes [BR:
bnd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KWG56_03605
Messenger RNA biogenesis [BR:
bnd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KWG56_03605
Ribosome biogenesis [BR:
bnd03009
]
Prokaryotic type
rRNA processing factors
KWG56_03605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QYC11109
LinkDB
All DBs
Position
complement(729595..732342)
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AA seq
915 aa
AA seq
DB search
MSKTMLIDAAHPEETRVAIVDGRQIEEFDFESRAKRQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFNEIHPDYYQIPVADREAIMAEAHDDEDDDDLDRDSTGDDVDPESALADE
ERLKRRLMRRYKIQDVIKRRQILLVQVVKDERGAKGAALTTWLSLAGRYCVLMPNTGKGG
GISRKITNTSDRRRLKSAVAALEVPQGMGLIIRTAGAKRTKAEIKRDYQYLLRLWETIRE
TTLASNAPSMIYEEENLVRRAVRDMFDKDFDGIQVEGVEGFKEARDFMRVLMPAQAKKVH
LYRGSRPLFAANGIEELLTQIHQPVVPLKSGGYLVINQTEALVAIDVNSGRATKERNVEQ
TAFKTNMEAAVEAARQLRLRDLAGLVVIDFIDMDEGKNNRTVERVLKEALAADRARIQMG
RISPFGLMEISRQRRRLGVIEGATEACPHCQGSGRIRSAESAALMTLRAVDIEAGKNGAG
VVVLKVCTAVGLYILNHKRAYLQDLLERRGLNVIVQIDDSLGQGEHNIERTETNEDFVAP
EIELPNLNDDFDASLYEDEDEDGDDEEIISDDDDEDEDSLEREDSDDDEPRERAERAESG
GRGRGRNRRRRGGRRDEETTDAPEALTVEDASDDEEDENGRRRRRGRRGGRRVREDGERD
VYTWVRGRTPSLDDPYVWFDPLNPSRAEPRQERAERPVAAEAEVEGLDVVASEGASEEGG
RSRRRRRRGRGRGGDAAHEQKVENRATNEGMAPDGSPDTPMAVMIAPTEDTVEADTPAIA
PEPQRRRVRRKSASAETAAQVAVEIEAKAEPETAAEPHVEPHPDTAIETNEAPVEGTPVQ
LDVTPQTAFAVEQALAQAVHEPQPAFVDLASVEAVVVNEPVVAPQPEVDVQAIIAEDPNQ
IVAPPEKPKRGWWRR
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagacaatgctgatcgatgcggcgcatccggaggagacccgggtcgccatcgtg
gatggacggcagattgaggaattcgatttcgaatcccgtgcgaagcgccaacttcgcggc
aacatctatctcgccaaggtcacccgcgtagagcccagccttcaggccgccttcgtcgag
tacggcggcaatcgccacggtttcctggccttcaacgaaatccaccccgactattaccag
atccctgtcgccgaccgcgaagccatcatggccgaagcgcacgacgatgaggacgacgac
gatcttgaccgcgattccacgggcgacgacgtcgatcctgaatccgccctggcggatgag
gagcgcctgaagcgccgcctgatgcgtcgctacaagatccaggacgtcatcaagcgtcgc
cagatcctgctggtgcaggtcgtcaaggacgagcgcggcgccaagggcgcggccctgacc
acctggctgtcgctggcgggccgctactgcgtcctgatgccgaacaccggcaagggcggc
ggcatttcgcgcaagatcaccaacacctccgaccgccgtcgcctgaagagcgccgtcgcc
gccctggaagtgccgcagggcatgggcctgatcatccgcacggcgggcgccaagcgcacc
aaggccgagatcaagcgcgactatcaatatctgctgcggctgtgggagacgatccgcgag
acgaccctcgcctccaacgctccgtcgatgatctacgaagaggaaaacctcgtccgccgc
gccgtgcgcgacatgttcgacaaggactttgacggcattcaggtcgagggcgtcgagggc
ttcaaggaggcgcgcgacttcatgcgcgtgctgatgcccgcccaggccaagaaggttcac
ctgtatcgcggctcgcggcccctcttcgccgccaacggcattgaagagctgctgacacag
attcaccagccggtcgtaccattgaagtcgggcggctatctggtcatcaaccagaccgag
gccctggtggccatcgacgtcaactcgggccgcgccaccaaggaacgcaacgtcgagcag
acggcgttcaagaccaatatggaagccgccgtcgaggccgcgcgccagctgcgcctgcgc
gaccttgcgggtctggtcgtcatcgacttcatcgacatggatgagggcaagaacaaccgc
accgtcgagcgcgtgctgaaggaggccctggccgccgaccgcgcccgcatccagatgggc
cgcatctcgcccttcggcctgatggagatcagccgccagcgccgccgcctgggcgttatc
gagggcgcgaccgaggcctgcccgcactgccagggctcgggccgcatccgttcggcggaa
tccgccgccctgatgaccctgcgcgccgtcgacatcgaggccggcaagaacggcgcaggc
gtcgtggtgctgaaggtctgcaccgccgtcggcctctatatcctgaaccacaagcgcgcc
tatctgcaggacctgctggagcgtcgcgggctgaacgtcatcgtccagatcgacgacagc
ctgggtcagggcgagcacaatatcgaacggaccgagacgaacgaggacttcgtcgcgccc
gagatcgaactgcccaacctgaacgacgacttcgacgcctcgctctacgaagacgaggac
gaggacggcgacgacgaagaaatcatcagcgatgatgacgacgaggacgaagactcgctg
gaacgcgaggacagcgacgacgacgaaccccgtgaacgcgccgagcgcgccgaatccggt
ggtcgcggtcgcggccgcaaccgtcgccgccgcggcggtcgtcgtgacgaggaaaccacg
gacgcgccggaagccctgaccgtcgaagacgcctctgacgacgaggaagacgagaacggc
cgccgccgtcgtcgtggccgtcgaggcggtcgccgcgtccgtgaggacggcgagcgcgac
gtctacacctgggtgcgcggccgcacgccgtcgctggacgatccctatgtctggttcgac
ccgctgaacccgagccgcgccgagccgcgccaggaacgcgccgaacgccccgtcgctgct
gaggcggaagtcgaaggactggatgtcgtcgcctcggaaggtgcgagcgaagaaggcggt
cgttcgcgccgtcgtcgccgtcgcgggcgtggtcgcggcggagacgcagcgcacgagcag
aaggtcgagaaccgcgccaccaacgaaggcatggcgccggacggttcgcccgacacgccg
atggccgtcatgatcgcgccgaccgaagacacggttgaggccgatacgcccgccatcgcg
cctgagccgcaacgccgccgcgtgcgccgcaagtcggccagcgccgaaaccgcagcccag
gtcgccgtcgagatcgaagccaaggccgagccggaaacggctgcagagccccacgtcgaa
ccgcatcccgacactgcgatcgagacgaacgaggcgccggtcgaaggcacgccggtccag
ctggacgtcacgccccagacagccttcgccgtcgaacaggcgctggctcaggctgttcac
gaaccccagcccgctttcgtcgatctggcgtctgtcgaagccgtggtcgtcaacgaaccc
gtcgtcgcgcctcagcccgaagtcgatgttcaggccatcatcgccgaagatccgaaccag
atcgtcgcacctcccgaaaagcccaagcgggggtggtggcgccgctga
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