Brevundimonas nasdae: KWG56_05870
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Entry
KWG56_05870 CDS
T07529
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bnd
Brevundimonas nasdae
Pathway
bnd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bnd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KWG56_05870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bnd03019
]
KWG56_05870
03400 DNA repair and recombination proteins [BR:
bnd03400
]
KWG56_05870
Enzymes [BR:
bnd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KWG56_05870
Messenger RNA biogenesis [BR:
bnd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KWG56_05870
DNA repair and recombination proteins [BR:
bnd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KWG56_05870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QYC11503
LinkDB
All DBs
Position
1196395..1198896
Genome browser
AA seq
833 aa
AA seq
DB search
MGGTESEAWLAKTQGKASNAFCAAETTADRLAMLRELARLSGGRAYPPIPIADEDIAALG
RFGLALAHDGAVRILDENLDDIALGLDRAMRVDPDPRGVAATAEPDAALLRLTTHRRYRS
RTQKSAIQAILTSPDGASLMASMPTGAGKSLLFQLPTLWWREATPGACAVVVVPTVALAE
DHQRTLQTMPGLEASRALSGSTSLTERQDVLARFRNGEIPILLLSPEAAFGFARQDLLQT
ALPLDAAEKYGLQGILAGVFIDEAHIVESWGRSFRPDFQRLPALISELRRQNPALRTVLL
SATLNPSALNVLRNDYGSGDWSEIHARSPRYQFDLAAADFETHEARNDALLRLIDRAPRP
AVVYTTRVDHAEALHTRLVRDGGYRRIALFTGAVADGDVRRRIVSQWADGDLDLVVATSA
FGLGVDKSDVRTVIHACLPEGAARWYQEVGRASRDGHQGLGVTLWVPKGETSKPQGRRAT
EEDSFQSDEDDAGSMAGGGWLSRDIAEARWRALLAAANVDGRDPQTAATRLTLPLDAARE
GMDPRYTGERNRGWNRSLLNLLQRQGVLTVDADAPQKDDIPVHWRVSVDRDDLLNLTDQI
RWDQIWTEIFEGRDREVLEARAELRAFVKAMRRQATDCLLRSTYRLIEPEAAPEACGRCT
ACRAQSVSPPETPTPATAPRPWGGYAPRQGLMPRGVLLVAPEASDTHLIERLVGVGVEQV
VAPERDAEDVARRLSSLGARFGFVRGAANWLRRDARLLNLPTALLPPSSERLGPWLREAE
RFIADYPDQSVILIADPNQRIDGRPLHQITSQHAPYDEAVLDAFIQDFREPAQ
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgggtgggaccgaatctgaggcctggctggccaaaacccaaggcaaggcaagcaacgcc
ttctgcgcggccgaaacaaccgccgaccgattggcgatgctgcgagaactcgcaaggctc
agcggcggccgagcctatcccccgatcccaatcgccgacgaggacatcgccgcgcttgga
cgcttcggcctggccctcgcccacgacggcgccgtgcggatcctcgacgagaacctagat
gatattgcgctcggattggaccgggcgatgcgggtcgatccagacccacgcggcgtcgcg
gcaaccgcagagcctgatgccgccctcctgcgactgacaacgcaccgccgatatcggagc
cgaacccagaagtctgcgatccaggctattctcacgtcgccggatggcgcgagcctaatg
gcgtcgatgccgaccggcgccggcaaaagcctgctgtttcaactgccgaccctctggtgg
cgggaagcgacgccgggagcctgcgcggtcgttgttgtccccaccgtcgccctcgccgag
gatcaccaacggacgctgcagacgatgcccggccttgaggcgtcgcgtgcgctcagtgga
tcgacctcactcacggagcgacaagacgtccttgcgcgcttccggaatggagaaatcccg
attctgctcttgtcgcctgaagccgcttttggttttgcgcgacaagatttgctgcagacc
gccctccctctggacgccgctgaaaaatatggccttcagggaatcctcgccggcgtattc
attgatgaagcccatatcgttgagagttggggccgaagcttccgaccggacttccaacgc
cttccagcgctcatcagcgaactccgccgtcagaaccccgcgcttcgcacagttcttctg
tcagcgactttgaacccatcggccctaaacgttctgcgcaatgactatgggtcgggcgac
tggagcgaaatccacgcgcgcagtccccgttatcagttcgaccttgccgccgcagacttt
gagacccacgaggcgcgcaacgacgccctccttcgcctgatcgaccgcgcgccccgcccg
gctgtcgtttacacgacccgggtcgaccatgccgaggctttacacacccgtctcgtcaga
gacggcgggtatcgccgcatcgccttgttcaccggggcagtcgccgacggcgatgtccgc
cgccgtatcgtctcacaatgggccgacggcgatctcgacctcgttgtcgcgacctccgcc
ttcggccttggcgtcgacaagagcgatgtccgcacggtgatccacgcctgcctccccgaa
ggcgccgcgcgctggtatcaagaggttgggcgggcgtctcgggatggccaccaaggtttg
ggcgtgaccctttgggttccgaagggcgagacctcaaagccgcagggaagacgcgcgacc
gaggaggacagcttccagtcggatgaggacgacgcgggctccatggccggcggcgggtgg
ctctcccgcgacatagcggaagcgcgctggcgggcccttttggccgcggccaacgtcgac
ggccgtgatccccagacagcggcgacgcgtctgacccttccccttgatgcggcgcgggag
ggcatggatccacgttacactggcgagcgcaatcgcggttggaaccgcagcctactcaat
ctgctgcaacgacagggcgttctgactgtcgacgccgacgctccccagaaggacgacatc
cctgtccactggcgcgtgtccgtcgaccgcgatgacctgctgaacctgacagatcagatc
cgatgggaccaaatctggacagaaatctttgagggccgagaccgcgaagtgttggaagcg
cgagcggagttgcgggcctttgtgaaggctatgcgccgccaggccacggattgcctcttg
agaagcacctatcgtctcattgaacccgaagccgcgccggaggcttgcggccgctgcacc
gcgtgtcgcgcccaatccgtctcgccgcccgagacgcccaccccggcaacggccccgcgg
ccatggggtggctacgccccgcgccaaggccttatgccccgcggcgtcctcttggtcgcc
cctgaggcgtccgacactcatctgatcgagcgccttgtgggcgtcggcgtcgaacaagtc
gtcgcgcctgagcgcgacgctgaagacgttgctcgcagattgtcatcgctcggcgcccgt
ttcggcttcgtgcgcggcgcggcgaactggctccgacgagacgctcgattgctcaatctt
ccgacggccctcctcccaccgtcatcagagcgactgggaccctggctgcgtgaagccgag
cgcttcattgccgactaccccgaccagtccgtaattctgatcgcggatccgaaccagcga
atcgatggacgtcccttgcatcagatcacctcgcagcacgccccgtatgacgaggccgtg
ctcgacgccttcatccaagatttccgagaacctgcgcaatga
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