Brevundimonas nasdae: KWG56_06250
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Entry
KWG56_06250 CDS
T07529
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bnd
Brevundimonas nasdae
Pathway
bnd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bnd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KWG56_06250 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bnd03400
]
KWG56_06250 (mfd)
Enzymes [BR:
bnd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KWG56_06250 (mfd)
DNA repair and recombination proteins [BR:
bnd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KWG56_06250 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QYC11568
LinkDB
All DBs
Position
complement(1276989..1280435)
Genome browser
AA seq
1148 aa
AA seq
DB search
MDAQVHRTDAELGGAPEGLDALIVAERVKESGGVGLFVARDYQRSGAFVQAFQFFTQDIE
VLDYPAWDCLPYDRLSPTAGIAAQRMATLTRLAQRKPDDAPVLVVTTVSAAMQRTPPRSV
TTLAGFDAKVGRDLDIQALERYFAANGYVRASTVSERGEFAVRGGVVDVFPPGFAEPVRL
DMFGSELESIRTFDPETQRSTGQMKAVALAPVSEALLDKEAISRFRTGYLNLFGAPGDDP
LYATISEGARRQGMEQWLPLFYDGLDTLFDYLPDQAQVFLDNQVETARSERWDLVADAYE
ARAEAAKTKGGASANRALPPKRLYLDEGDWNQALAGRAVRRFTPFSSGGEDAGGRLGRTF
GAERAQDSVNLFEAVAAHAQALKSEGKRVLFASWTEGSSDRLATMLADHGLDHIVAVRDW
DDVQNAPKDIYLRGVLPVEHGFVTDDVAVICETDILGDRLARPRKKRRASNFLAEASALT
TGDLVVHLDHGIGRYEGLKTLDIQQAPHDCLELLYAGESKLYLPVENIDLLTRYGSDSEG
AQLDRLGGAGWQARKAKAKERLRAMAEGLIALAAKRALRETEAVVPPSGLFAEFCARFPY
EETDDQLNAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVAPTT
LLARQHFKTFTERFAGWPVKVRQLSRMVGSKEASATRQGLKDGSVEIVVGTHAVLSEQVG
FRDLGLVIVDEEQHFGVKHKEKLKTLRADVHLLTLTATPIPRTLQMALSGIREMSIIATP
PVDRLAVRTYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPDIEKFLREQVPEVKFV
VGHGQMSATQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLVVHRADMFGLAQLYQI
RGRVGRSKARAFAYLTTDAVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNLL
GDEQSGHIREVGVELYQQMLEDAVAELRENGEPGSVDRGWSPSINVGASVLIPENYVPDL
NVRLSLYRRLSDAEQAEDREALAAELIDRFGPLPDEAQQLLKIVGIKANCRKACIEKIDI
GPRGAVLTLRDNSFPNPVGLVGLIQKNQAFWKIRPDQKIVVSGDWPTAEDRLKVAERITA
DLARVAGA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgcaggtgcatcggaccgacgcggagctgggcggcgcgccggaaggtctggac
gccctgatcgtcgccgaacgggtcaaggagtcgggtggcgtcggcctgttcgtcgcacgc
gattatcagcggtccggggcattcgttcaggcgtttcagttcttcacgcaagatattgaa
gtgctggactatccggcatgggattgcctgccttacgaccggcttagcccaacagccggg
atcgccgcccaacgcatggcgaccctgacgcggctggcccagcgcaagccagacgatgcg
ccggttctggtggtcaccacggtgtcggcggccatgcaacgcacgccgccccggtcggtg
acgacgctggcgggtttcgacgccaaggtcgggcgtgatctggatatccaggcgctggag
cggtacttcgccgccaatggctatgtccgcgcctcgaccgtatccgagcgcggcgaattc
gcggtgcgcggcggggtggtggatgtcttcccgcccggcttcgccgagccggtgcgtctg
gacatgttcggctccgagctggaatcgatccgcacctttgatcctgaaacccagcgttcg
accggacagatgaaggcggtcgccctggcgcctgtgtccgaggccctgctggacaaggaa
gccatctcgcggttccgcacaggatacctgaacctgttcggggcgccgggcgatgacccg
ctgtacgccaccatcagcgaaggggcgcgacgccagggcatggagcagtggctgccgctg
ttctacgacgggctggacaccctgttcgactacctgccggatcaggcgcaggtcttcttg
gacaatcaggtcgagacggcgcgcagcgagcgctgggatctggtcgctgacgcctatgag
gcgcgggctgaggccgccaagaccaagggcggggccagcgccaatcgcgccctgccgcca
aaacggctgtatctggacgaaggcgactggaaccaggccctggccggtcgtgctgtgcgg
cgcttcacgcccttctccagcggtggagaggatgcaggcggacggctgggtcgcacgttc
ggcgcggagcgggcccaggacagcgtcaatctgttcgaggccgtcgctgcccatgcccag
gcgctgaaaagcgagggcaagcgggttctgttcgcgtcgtggacagagggctcgtccgac
cgtctggcgaccatgctggcggaccacgggctggatcacatcgtcgccgtgcgcgactgg
gacgacgtccagaacgcgcccaaggacatctatctgcgcggcgtgctgccggtggagcat
gggttcgtcaccgacgacgtggcggtgatctgtgagacggacatcctgggcgatcgtctg
gcgcggccaaggaagaagcggcgggcgtcgaacttcctggccgaggcttccgctctgacg
accggcgatctggtcgtgcacctggatcacggcatcgggcggtatgaggggctgaagacg
ctggacatccagcaggcgccgcacgactgcctggagctgttgtacgccggtgagagtaag
ctctatctgccggttgaaaacattgatcttctgacccgatacggctcggactcggaaggc
gcgcagctggaccggctgggcggcgctggctggcaggcgcgcaaggccaaggccaaggaa
cgcctgcgggcgatggccgaggggcttatcgcgctggcggccaaacgtgcgctgcgtgaa
accgaagccgtggttccgccatccggcctgttcgccgagttctgcgcccgcttcccctac
gaggagacggacgaccagttgaacgccatcggcgatgtgctggaagacctgggcaagggc
acgccgatggatcgcctgatctgcggcgatgtcggcttcggcaagaccgaggtggcgctg
cgggcggccttcgtcgtggccatgacgggccagcaggtggccattgtcgcgcccacgacc
ctgctggcgcgccagcacttcaagaccttcaccgaacgcttcgccgggtggccggtgaag
gtgcggcagctgtcgcggatggtgggatcgaaggaggcgtcggcgacgcggcaggggctg
aaagacggttcggtcgagatcgtcgtcggcacccatgcggtgctgtcggaacaggtcggc
ttccgcgatctgggtctggtgatcgtggacgaagagcagcacttcggcgtcaagcacaag
gagaagctgaagaccctgcgcgccgacgtgcacctgctgaccctgaccgcgacgccgatc
ccgcgcacgctgcagatggcgctgtcgggcatccgcgagatgtcgatcatcgccacgccg
ccggtcgaccgtctggcggtgcggacctacgtcacgccgtgggaccctgtgctggtgcgc
gaggccctgctgcgagaaaaataccgcggcggtcaggcctattatgtcgcgccgcgcctg
aaggacctgccggacatcgagaagttcctgcgcgaacaggtgccggaggtgaagttcgtc
gtgggccacggccagatgagcgcgacccaactggaggaggtcatgagcgccttctacgac
ggcgaatatgacgtgctggtctcgaccaccatcgtggagagcgggctggatattcccacg
gccaacacgctggtggtgcaccgcgccgacatgttcggcctggcccagctttatcagatc
cgcggacgggtcgggcgttccaaggcgcgcgccttcgcctatctgaccaccgatgcggtc
aagccgatgaccctgtcggccgagcggcggctgcaggtgctgcagtcgctggataatctg
ggggccgggttccaactggccagccacgatctggatcagcgcggcgggggcaatctgctg
ggcgatgaacagtcgggccatatccgcgaggtcggcgtcgaactgtaccagcagatgctg
gaggacgcagtcgccgaactgcgcgagaacggcgagccgggttcagtggatcgtggctgg
tcgccgtcgatcaacgtcggcgcttctgttctgattccagagaactacgtcccagacctg
aatgtgcgtctaagcctttatcgacgcctgtccgacgccgagcaggccgaggatcgcgaa
gccctggctgctgaactgatcgacaggttcggcccgctgccggacgaggcgcagcaactg
ctgaagatcgtcggcatcaaggcgaactgccgcaaggcctgcatcgagaaaatcgacatc
ggcccgcgcggcgccgtgctgaccctgcgtgacaacagtttccccaaccccgtcgggctg
gtggggctgatccagaagaaccaggcgttctggaagatcaggccggatcagaagatcgtg
gtgtcaggcgactggccgacggcagaggaccggctgaaggtggcggaacggatcacggcc
gacctggcccgggtggcgggggcgtag
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