Brevundimonas nasdae: KWG56_06940
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Entry
KWG56_06940 CDS
T07529
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bnd
Brevundimonas nasdae
Pathway
bnd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bnd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KWG56_06940 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bnd03019
]
KWG56_06940 (rnr)
03016 Transfer RNA biogenesis [BR:
bnd03016
]
KWG56_06940 (rnr)
Enzymes [BR:
bnd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KWG56_06940 (rnr)
Messenger RNA biogenesis [BR:
bnd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KWG56_06940 (rnr)
Transfer RNA biogenesis [BR:
bnd03016
]
Prokaryotic type
tRNA degradation factors
KWG56_06940 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
FeoC
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QYC11689
UniProt:
A0ABX8TL00
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All DBs
Position
1417229..1419535
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AA seq
768 aa
AA seq
DB search
MSKSPKRPPAGLPDKDTLVAFLREAGSAEKTDIARHFGLKGGDRRALREMIRELEAEGRL
GKRGRKGFSEAGALPPVGVADVIERDVDGELYVRLVEASPDAPQALLIPDKTKAAPGMGD
RLLVKFQRGAEGWEARLIKKLDIGTNRVLGVIRKSARETRVEPVDRRSKDVLLVPQAQSG
DLRDGDLVLAAIEKGEHRYGPKRGKILENIGKEDDPRAASLIAIYAHSIPTGFSEAVERE
AEDQELPTLKGREDLREVPFITIDPADARDHDDAVYAARDEDPKNPGGWIVWVAIADVAA
YVCPGSQLDREAREKGNSTYFPDRVEPMLPEVLSNGLCSLKEGENRACMAVRMVFDKDGR
KTGHKFVRGLMRSHAKLSYEQAQAAIDGQTDDATGPIMEAILYPLWNAYHTMLKGRLKRS
PLQIESAERRIRMAPDGGIASIEKRTSLEAHRLIEEMMIQANVCAAETLEQKKTPLIYRI
HDAPSQEKIFNLADFLHTIGKPWNKGEPGTTKRFNKLLDETRDTEHADVVNEVVLRTQMQ
AIYSPENVGHFGLNLDRYAHFTSPIRRYSDLIVHRGLIRALNLGKDGLTDREIAELPAIA
EQVTSTERRSMAAERDAMDRYIAAFLEEHIGATFAGRITGVTRFGLFIRLEDTGADGLVP
VSTLGSEYFTHDDRAHALVGERTGKRFTLGRMVEVKLREATPVTGGLVFEMLSEPEPRDP
NAPAPRYGIRGRGGDGPPMRGKNRPGPKPRNGSKPSGGLKGVRKGKRK
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaatcacccaagaggccgcccgccggtctccccgacaaagacaccctcgtcgcc
ttcctgcgcgaggccggatcggccgagaagaccgatatcgcacgccacttcgggctaaag
ggcggcgaccgccgggccctgcgcgaaatgatccgcgagctggaggccgaaggcaggctg
ggcaaacgcggccgcaagggcttttccgaagccggcgccctgccccctgtcggcgtcgcc
gatgtgatcgaacgcgatgtggacggcgaactgtacgtccgcctggtcgaggccagcccc
gatgcgccccaggccctgctgatccccgacaagaccaaggccgcccccggcatgggcgac
cgcctgctggtcaagttccagcgcggcgccgaaggctgggaagcccggctgatcaagaaa
ctggatatcggcacgaaccgtgttctgggggtgatccgcaaatcggcgcgtgagacgcgg
gtcgagccggtcgaccgccgctccaaggatgtgctgctggtgccccaggcccagtccggc
gacctgcgcgacggcgatctggtcctggccgccatcgaaaagggcgagcatcgctatggc
cccaaacgcggcaagattcttgagaacatcggcaaggaggacgatccccgcgccgcctcc
ctgatcgccatctacgcccacagcatcccgaccggcttctccgaggcggtcgagcgtgag
gccgaggatcaggaactgccgacgctgaagggccgcgaggacctgcgcgaggttcccttc
atcaccatcgaccccgccgacgcgcgcgaccacgatgacgccgtctatgccgcccgcgac
gaagatcccaagaaccccggcggatggatcgtctgggtcgccatcgccgacgtcgccgcc
tacgtctgccccggctcccaactggaccgcgaggcccgcgaaaagggcaactcgacctat
ttccccgaccgcgtcgaaccgatgctgccggaggtgctgtcaaacggcctgtgcagcctg
aaggagggcgagaaccgcgcctgcatggccgtgcgcatggtcttcgacaaggacggacga
aagacgggccacaagttcgtgcgcggcctgatgcggtcgcatgccaaactgtcttacgaa
caggcccaggccgcaatcgacggccagacagacgacgccaccggcccgatcatggaggcc
atcctctatccgttgtggaacgcctatcacaccatgctgaagggccgcctgaagcgcagc
ccgctgcagatcgaatccgcagagcgccgcatccgcatggcccctgacggcggcatcgcc
tccatcgagaagcgcacctcgcttgaggcccaccggctaatcgaagaaatgatgatccag
gccaatgtctgcgccgccgagaccctggagcagaagaagacgcccctgatctaccgcatc
cacgatgcgcccagtcaggagaagatcttcaacctggccgacttcctgcacaccatcggc
aagccgtggaacaagggcgagccgggcacgaccaagcggttcaacaagctgttggacgaa
acgcgcgacaccgaacacgccgacgtggtcaacgaggtcgtcctgcggacccagatgcag
gccatctattcgcctgagaacgtgggccacttcggtctgaatctggaccgctacgcccac
ttcacctcccccatccggcgctattccgacctgatcgtgcatcgcggcctgatccgggcc
ctgaacctgggcaaggatgggctgacggatcgcgagatcgccgaactgcccgccatcgcc
gaacaggtcacctcgaccgagcgtcgctcgatggccgctgaacgcgatgcgatggaccgc
tatatcgccgccttccttgaggagcatatcggcgcgaccttcgccgggcgcatcacaggc
gtgacccgtttcggcctgttcatccgactggaggacacgggcgccgatggtctggtcccc
gtctcgactctgggcagcgaatatttcacccacgacgaccgcgctcacgccctggtcggc
gaacgtaccggcaagcgttttaccctgggccgtatggtcgaggtcaagctgcgtgaggca
acgcccgtcaccggcgggctggtctttgaaatgctcagcgaaccggaaccccgcgatccc
aacgccccggccccgcgctacggcatccgtggaaggggcggcgacggcccgcccatgcgc
ggcaagaaccgtcccggccccaagccccgcaacggctccaaaccctctggcggcctgaag
ggcgtcaggaagggcaagcggaaatga
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