Brevundimonas naejangsanensis: DA69_12875
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Entry
DA69_12875 CDS
T04375
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bne
Brevundimonas naejangsanensis
Pathway
bne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DA69_12875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bne03019
]
DA69_12875
Enzymes [BR:
bne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DA69_12875
Messenger RNA biogenesis [BR:
bne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DA69_12875
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ANF55554
UniProt:
A0A172Y8L9
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All DBs
Position
2678248..2679726
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AA seq
492 aa
AA seq
DB search
MGLNKALLTALAATGYEKPTPIQAKSIPDVMKGKDLLGIAQTGTGKTAAFALPILHRLAE
NRVAPKPRTTRCLVLSPTRELATQIADSFKQYGAHLGFRVAVIFGGVKYGPQERALQQGL
DVLVAAPGRLLDHLQQKTLDLSQTEIFVLDEADQMLDLGFIKPIRQIVSRIPAKRQNLFF
SATMPSEIGKLAGELLKDPVKVQVTPQATTVERIQQSVIWVEQGKKRALLTELFSDPAYT
RCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERALEAFKNGKLRVLVATDIAA
RGIDVDKVTHVVNFELPYVPEAYVHRIGRTARAGKDGTAISFVAGDEMKLLKDIEKVTRQ
KIPAIDRRNDKALAQLDASIMAAGVAKKATLPEREGRSDGEGRGGRGRGGRNPHREGVKQ
EAGGQPHRQRRGRNGAPAVERAAPVYDPMAGDRARSSVRAAPSAEPKPVGELQRRPRRRR
PSNGGKGHAAQG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgaacaaggctctgctgaccgccctggccgcaaccggctacgagaagccgacg
ccgatccaggccaagtccatccccgacgtgatgaagggcaaggacctgctgggcatcgcc
cagaccggcaccggcaagacggcggccttcgccctgccgatcctacatcgcctggccgag
aaccgcgtggcgcccaagccgcgcaccacgcgctgcctggtcctgagcccgacgcgcgaa
ctggcgacccagatcgccgacagcttcaagcaatacggcgcccacctgggcttccgcgtc
gccgtcatcttcggcggcgtgaaatacggcccgcaggaacgcgccctgcaacaggggctt
gatgtgctggtcgcggcgcccggccgcctgctggaccacctgcaacagaagacgctggac
ctgtcgcagaccgagatcttcgtcctggacgaggccgaccagatgctggacctgggcttc
atcaagccgatccgccagatcgtcagccgcatcccggccaagcgccagaacctgttcttc
tcggccaccatgccgtctgagatcggcaagctggccggcgagctgctgaaggacccggtc
aaggtccaggtcacgccgcaggccaccacggtcgagcgcatccagcagtcggtgatctgg
gtcgaacagggcaagaagcgcgccctgctgaccgagctgttctccgaccccgcctatacg
cgctgcctggtcttcaccaagaccaagcacggcgccgacaaggtcgcggcctatctggag
gcgggcggcgtcgaggccggcgccatccacggcaacaagagccagccgcaacgcgagcgc
gcgcttgaagccttcaagaacggcaagctgcgcgttctggtcgccaccgacatcgccgcg
cgcgggatcgacgtggacaaggtcacccacgtggtgaacttcgagctgccctatgtgccg
gaagcctatgtccaccgcatcggccggacggcccgagcgggcaaggacggcaccgccatc
agcttcgtcgccggcgacgagatgaagctgctgaaggacatcgagaaggtcacgcgccag
aagatccccgcgatcgaccgccgcaacgacaaggcgctggcccagctggacgcctccatc
atggcggcgggcgtggccaagaaggcgaccctgcctgaacgtgaaggccgctcggacggc
gaaggccggggcgggcgtggtcgcggcggccgcaacccgcaccgtgaaggcgtcaagcag
gaggccggcggtcagccgcaccgccagcgtcgcggccgcaacggcgcgcctgcggttgag
cgcgcggcgccggtctacgatccgatggcgggcgatcgcgcccgctcgtcggtgcgcgca
gcgccgtccgccgagcccaagccggtcggcgaactgcagcgccgcccgcgtcgtcgtcgc
ccgtcgaacgggggcaagggccacgccgcccagggctga
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