Brenneria nigrifluens: EH206_20395
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Entry
EH206_20395 CDS
T06070
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bng
Brenneria nigrifluens
Pathway
bng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EH206_20395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bng03019
]
EH206_20395
03400 DNA repair and recombination proteins [BR:
bng03400
]
EH206_20395
Enzymes [BR:
bng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EH206_20395
Messenger RNA biogenesis [BR:
bng03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EH206_20395
DNA repair and recombination proteins [BR:
bng03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EH206_20395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCR06298
LinkDB
All DBs
Position
4337852..4340416
Genome browser
AA seq
854 aa
AA seq
DB search
MKLAQLIDHLGVCSALRECLLPETSAGRLDRRALIRDWLCREKYAHHSDNELTVPDDSHA
GWPEQEEWEACGIRCHRIRQSFLLRVGSAWSPQWLEQGNMPFLACDEQQLCRQDTRIPMD
YVLRRYFRQDNYTHYQAPGQRDAVRRALFAPPGSTLLVNLPTGTGKTLVAQALMLTAPPQ
GALCLLIAPTTALVMELASRFGELLTEAGNKPESVTAWYSGLPVQDKYDTYARVRAGEQR
LIVTSPEATCSSLQFALFEAAKQGGLRHVIVDEAHIVATWGNGFRPHFQQLGGLIRGLKR
ISRAAHHPACSTLLMSATITEASRKTLRDTFDQQMTEVHANHLRPEPSYWCYQATNPSDK
RDKVLQSLAHAPRPLILYVTQPREAEEWAQLLRLQGYQRFATFTGDTPDDTRQSLLRKWD
KNQLDIMIATSAFGVGMDKNDVRTVIHATVPENMDRFYQEVGRGGRDGYACTSLLIYSHQ
DISQAEYLSSQKLIGLELGLERWKKLWSRAESLGDNLYRIDIERIRNGLNFRSKKNKFWN
LRTVLMMVRAGVLELDTELQNPPDKNLFADVRRYESAKEQIIRQNESSLVVRIMISNHTG
EELWKTRIIPSREKTLEAATANHNALINWLQAPLRRPLCETLVDLYSLTEFIPGHACGGC
PACRDRQMLNSDYLIPPPLLLNPTASAAQHALGRWQALSGLPYSSCFITYKPVIGDEWEL
EGWYQTVATLLVQLHRAGIIQRVRAESELLYSVFSAIPLGERLTLLSEELPESGESVADN
DVMGDLAELVLPAAETCRNGYLPPFSPAPLQLTLIPHDMPDPCHSRGAYYVHLDNHNWIT
LEQLQRKLDCVDYQ
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgaagctggcacaactgattgatcacttaggggtttgctcagcgctgagagagtgtctg
ctgcccgaaacatccgccgggcgactcgatcgccgggcgttgattcgtgactggctatgc
cgagaaaaatatgcccaccacagcgataacgaactgaccgtcccggatgacagccacgcc
ggttggccagaacaggaggagtgggaggcttgcgggatccgttgtcatcggataaggcag
agctttctgctgagagttgggtctgcatggagtccgcagtggcttgaacagggcaacatg
ccttttcttgcctgtgacgagcagcaattatgccgtcaggacacccgtatacctatggac
tatgtcctgcgtcgttacttcagacaggacaactatacccactatcaggcaccgggacag
cgtgatgcggtacgccgggccctgtttgctccgccaggcagtacactgctggtgaatttg
cccaccggcactgggaagacactggtggcgcaggcgctgatgttaacggctccgccgcaa
ggagcattatgcctgctaattgccccgacaactgcgttggtgatggagttagctagccgt
ttcggggagttgctgactgaagcagggaataaaccagaatcagtcaccgcctggtatagc
ggtttaccggtacaggataaatacgatacgtacgcgcgtgtccgcgcaggtgagcagcga
ctaattgtcacctctcccgaagcgacctgtagttcactgcagttcgcattgtttgaagcc
gcaaaacaggggggcttgcgtcatgtcattgttgatgaagcgcatattgtcgctacttgg
ggtaatggctttcgtccacacttccagcaactcggcggattgatccgtggtctgaaacgc
atcagccgtgcagcgcatcatccagcgtgctccacactgttaatgagcgccaccattact
gaagccagccgcaaaaccctgcgcgacactttcgaccagcagatgacggaagttcacgcc
aaccatcttcgcccggaaccttcttactggtgttatcaggcgacaaaccctagcgacaaa
cgggataaagtactgcagtcgctggcgcatgcgccgcgcccactgatcctctatgtgacg
caaccgagagaggcagaagagtgggcgcagttgcttcgtttgcaggggtaccaacgtttt
gcaacatttaccggtgatacaccggatgatacacgccagagtctgctcagaaaatgggat
aagaatcagctggatatcatgattgctacatcggcattcggcgtaggcatggataaaaac
gacgtgcgtacagtgatccacgctaccgtgccggaaaacatggatcgtttctatcaggaa
gtggggcgtggcggtcgcgatggctatgcctgtacctcactgctgatttacagtcatcag
gacatcagccaggcagaatacctgtcctcacaaaagttgattggtcttgagttggggctg
gaacgctggaaaaagctatggagcagggccgaatctttgggcgacaatctgtatcgtatt
gatatagagaggatccgtaacggccttaattttcgtagcaaaaaaaataaattttggaac
ctacgtacagtcctcatgatggtgcgagcaggcgtgctggaactggataccgaactgcaa
aacccaccagataaaaatttgtttgctgatgtcagacgctatgaatcggcaaaagagcaa
atcatccgacagaacgagagctcgctggtggtacgcatcatgatcagtaaccataccgga
gaagaactgtggaaaacacgcattatcccctcccgtgaaaagacgcttgaagcagcaacg
gctaaccataatgcgctaatcaactggcttcaggcgccactgcgaaggccactgtgcgag
acgctggtggatctctactccctgacagaatttatcccaggccatgcttgtggcggctgt
cctgcctgtcgcgatcgtcagatgcttaacagcgactatttgatcccgccgccgttgttg
ctgaacccgacagcatcggcggcgcagcatgcgttgggccgctggcaggcgctgagcggc
ctgccgtactcaagttgcttcattacttacaaaccggtgatcggcgatgagtgggaactt
gagggctggtatcagaccgttgcgacgctgctggtgcagttgcatcgagccggcattatc
cagcgagtcagggcagaaagtgagctgctgtacagtgtgttctccgctattccccttggt
gaacgccttaccctgctgagtgaagagttgccagaaagcggcgaatcagtagcggataat
gatgtcatgggtgatctggcagaactggtgttgccggcggcagagacgtgtcgcaatggc
tacctgccgccgttcagcccggccccgctgcaactgacgcttatcccccatgatatgcct
gatccctgtcactcccgcggggcgtactacgttcacctcgataatcacaattggatcacc
ctcgaacaacttcaaaggaaactagactgtgtcgattatcaataa
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