Bifidobacterium animalis subsp. animalis ATCC 25527: BANAN_05035
Help
Entry
BANAN_05035 CDS
T02047
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bni
Bifidobacterium animalis subsp. animalis ATCC 25527
Pathway
bni03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BANAN_05035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bni03400
]
BANAN_05035
Enzymes [BR:
bni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BANAN_05035
DNA repair and recombination proteins [BR:
bni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BANAN_05035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
Nuc_rec_co-act
Imm75
Motif
Other DBs
NCBI-ProteinID:
AFI63215
LinkDB
All DBs
Position
complement(1186913..1190497)
Genome browser
AA seq
1194 aa
AA seq
DB search
MPDDKARHSKANRSAEETYNELMNGSLLSLRQRLLEDQAFAGLVEGRVDAGEDADPSILV
GAPSGIRPALAAASADRKPVVIVVPSGREAEDLVGDLRSWYDGDPNEVAQLMAWETLPHE
RLSPRADTVANRMETFYRLCHPQSDSEMFGPIRILVMPVRSLIQPVVAGIGDVKPLVFAQ
GEEIALEDAVQGLVRNSYTRVDLVMDRGEFAVRGGIIDVFVPTEPHPVRIEFFGDEIDTI
RRFHSSDQRTYGEPIRSVWATPCRELQLTEGIRERAQSLIGQIPNADDLLESIANAIPQE
GMESLIPALVDDLEPVSSMLPRDSIVMLFDPERLRRAVDDLMKTAGEFLATSWHVAASGH
GAGAPISFESANFLDLDEMVGQLTYSNHELWKVSGFTVDQSLPGHVQIDAVAPQDLHGSG
EKAEDHLGELIRNDYAVVITAAAQGTLSRLKRMLNEIGVVHFDTIRSQAQDGFIDHASKT
ALLTERDLTGRTSVAAGVKTARKRRKSIDLMELKPGDFVVHEQHGIGRFIEMRQRTTGSG
KNQATREYLVIEYAPSKRNAPPDKLFIPTDQLDQVSKYIGAEIPKLNKLGGSDWAQTKAK
AKKHVHEIAQNLIRLYSARQRAKGFAFSKDTPWQKELEDAFPYQETADQLTTIDDVKADM
EKPIPMDRLICGDVGFGKTEIAIRAAFKAVQDSKQVAVLVPTTLLVQQHLQTFTERFEGF
PVNIRAMSRFQSTKEINETIKGLADGTVDVVIGTHKLLSPKIKFKDLGLVIIDEEQRFGV
EAKETLKAVRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDA
QATAAIRRELLRGGQVFYIHNRVEGIEEKAKRLQDLVPEARIGIAHGKMGRKQLDQIIRD
FWHRDIDVLLCTTIVETGLDISNANTLIVDRADRFGLSQLHQLRGRVGRGRDRAYAYFLY
DPSKPMTEQSHERLVTIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYV
RMVSEAIEDYKDPERTEPVAVTIDLPIEASIPVDYIGSDKLRLEVYRKLAGARSEKDLNE
LRDELTDRYGKPPKVFESLFDVARLREKARALGISEIIGQGRKLRISKIDPAESVQLRIS
RIYPGAQYRPMLNAYTIPTPFEGSMGSGPMESDEVLRWTEQLLDDLAWSAKPVK
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatgacaaggcaaggcacagcaaggcgaaccgatcggcggaggagacctacaac
gagctgatgaacggttcgctcctctccctcaggcagcgtcttttggaggatcaggcattc
gccggtttggtggagggccgtgtggatgcgggcgaggacgccgacccgagcatcctcgtc
ggagctcccagcggcattcgtccagcgctggccgccgccagtgcggaccgtaagccagtg
gtgatcgtcgtcccctccggtcgcgaggcggaggatctcgtcggcgatctgcgatcgtgg
tatgacggcgatccgaatgaagtggcacagctgatggcatgggagacgctgccccacgag
cggcttagcccacgcgccgacacggtggcgaaccgcatggagacgttctaccggttgtgc
cacccgcagtccgacagcgagatgttcggtccgatacgcattctggtcatgccggtgcgt
tcgctcatccagccggtggtggccggcataggcgacgtgaagccgctcgttttcgcgcaa
ggtgaggaaatcgcccttgaagatgccgtgcagggcctcgtccgcaattcctatacgcgc
gtcgatctggtgatggaccgtggcgagttcgcagtgcgcggcggcatcatcgacgtgttt
gtccccaccgaaccgcatccggtgcgcatcgagttcttcggtgacgagatcgacacgatc
cgccgcttccattcctccgaccagcgcacctatggtgagccgatcaggtcggtgtgggcc
acaccatgccgtgagctgcaactgaccgagggcatacgagagcgtgcgcaatcgctgatc
gggcagattccgaatgccgacgatcttctggaatcgatagccaacgcgatcccgcaggag
ggcatggagtctctcatcccggcattggtggacgacctcgaaccagtttcgagcatgctg
ccgagggattccatcgtaatgctgttcgacccggaacggttgcgtcgtgcagtggatgac
ctgatgaagacggcgggcgagttcctcgccaccagctggcatgtggccgcatcgggacat
ggcgcgggtgcaccgatctccttcgaatccgcgaacttccttgatctcgatgagatggtg
ggccagctcacctactctaaccacgagctatggaaggtgagcgggttcactgtggaccag
tcgctgccggggcacgtgcagatcgatgcggtggcgccgcaggatctccacggcagtggc
gagaaggccgaagatcatctcggcgagctcattcgcaacgattacgcggtcgttatcaca
gccgcggcacagggcacgctgagccgcctcaagcgcatgctcaatgagatcggcgtcgtg
catttcgacacgattcgttcgcaggcgcaagacggtttcatcgaccacgcgtcgaagacc
gcgctgctcaccgagcgcgacctcaccggccgcaccagtgtcgctgcaggcgtcaagacg
gcacgtaaacgtcgcaaatccattgatctcatggaattgaaaccgggcgatttcgtggtg
cacgaacagcatggcatcggtcggttcatcgagatgcgccaacgcacaaccggctcgggc
aagaaccaggccacccgcgagtacctggtcatcgaatacgcgccgagcaagcgcaatgcg
ccgccggacaagctgttcatacccaccgaccagctcgatcaggtgagcaagtacatcggt
gccgagattcccaagctcaacaagctcggcggttcggattgggcgcagaccaaggcgaag
gcgaagaagcatgtgcatgagatcgcgcagaacctcattcgcctgtattccgcgcgtcaa
cgtgccaagggattcgcgttcagcaaggacaccccgtggcagaaagagctcgaggacgcc
ttcccatatcaggagacggcggaccagctcaccacgatcgacgacgtcaaggccgatatg
gagaaaccgattcccatggaccgtctcatctgcggagacgtgggcttcggcaagaccgag
atcgcgatccgcgccgcgttcaaggcggtgcaggattccaagcaggtggctgtgctcgtg
ccgacgaccctactcgtgcagcagcatctgcagaccttcaccgaacgttttgagggcttc
ccggtgaatatacgcgccatgagccgattccaaagcacgaaggagatcaatgagacgatc
aagggtctcgccgacggcaccgtcgatgtggtgataggcacccataagctgctgagtccg
aagatcaagttcaaggatctgggccttgtgatcatcgacgaggagcagcgttttggtgtt
gaggcgaaggagacgctcaaggccgtacgcacgaatgtcgatgtactgagcctgtcggcc
acgccgattccacgcacgttggagatggccgtcaccggcattcgcgagatgtccacgctg
gcgactccgcccgaggaccgcctgcccgtgctcacctatgtgggcgcctatgaggacgcg
caggccaccgcggcgattcgacgcgaactgttgcgcggcggtcaggtgttctacatccac
aaccgtgtcgagggcatagaggagaaggccaagcgcctgcaggacctcgttcccgaggcc
cggataggcattgcccatggcaagatgggacgtaagcagctcgaccagatcatccgcgat
ttctggcatcgtgacatcgatgtgctgctgtgcacgacgattgtcgagacgggtctggat
atctcgaatgcgaacacgctgattgtggatcgtgccgaccgattcggcctctcccaattg
catcagctccgtggacgtgtcggtcgaggccgtgatcgtgcctatgcctatttcctgtac
gatccgagcaagccgatgaccgagcagtcccacgaacgtctggtcaccattgcgcagaac
accgcattgggttccggcttcgatgtggccatgaaggatctcgagttgcgcggcaccggc
aacctgctgggcgatgagcagagcggacacatcgaaggcgtgggtttcgacctctatgtg
cgcatggtgagcgaggcgatcgaggattacaaggatccggaacgcacggaaccggttgcg
gtcaccatcgacctgccgatcgaggcatcgatacccgtggactacatcggttccgacaag
ctgcggctagaggtctaccgcaagctggccggtgcccgcagcgagaaggacctgaacgag
ttgcgcgacgaactgaccgaccgctacggcaagccgccgaaggtgttcgaatcattgttc
gacgtggcgcgtcttcgtgagaaggcacgtgcgcttggcatcagcgagatcatcggccag
ggcaggaagctgcgcatctcgaagatcgaccctgccgaatcggtgcagctgcgcatctcg
cgcatctacccaggtgcccaataccggcccatgttgaacgcgtacaccatccccacgccg
ttcgaaggttcgatgggttccggtccgatggaatcggatgaggtgctgcgttggaccgag
cagctcctcgacgatctagcgtggtctgcaaagcctgtgaagtag
DBGET
integrated database retrieval system
