Bifidobacterium animalis subsp. animalis ATCC 25527: BANAN_05945
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Entry
BANAN_05945 CDS
T02047
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bni
Bifidobacterium animalis subsp. animalis ATCC 25527
Brite
KEGG Orthology (KO) [BR:
bni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bni03019
]
BANAN_05945
Enzymes [BR:
bni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BANAN_05945
Messenger RNA biogenesis [BR:
bni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BANAN_05945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_19
AAA_22
SLFN-g3_helicase
T2SSE
nSTAND3
HA2_C
AAA_30
ResIII
AAA_11
NACHT
Zeta_toxin
AAA_16
AAA_23
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
AFI63397
LinkDB
All DBs
Position
1414351..1418397
Genome browser
AA seq
1348 aa
AA seq
DB search
MKFEYPDQLPVSAAREAIANAVRSSQVVIISGQTGSGKTTQLPKILLELGRGSHGKQIVH
TQPRRLAARTVAERIADEMGVHLGDEIGYQVRFTDESSPKTRLRVVTDGILLAQIQRDPK
LTRYDTIIIDEAHERSLNIDFLLGYLTALLPLRRDLKLIITSATIDSVKFQKHFEDALHT
KVPVIEVSGRTYPVTICYEPLGGTPALMRHVPGFADGTSGDDITNPDAEAMDMPTAVARA
CTELAILSTHDQGPRDILVFASGERDIRDFEQALRHHFGPRAADMRRPDAIEIVPLFARL
SAKEQHRVFEPHTHQRIVIATNVAETSLTVPGIRYVVDPGNARISRYSKQAKVQRLPIEP
ISQASADQRSGRCGRIADGIAIRLYSSEDYESRPRFTEPEILRTSLGAVVLHMLSVGVAK
TAEDITDFGFIDPPDIKAVSDGINELTELRAISRKRGVMQLTHTGRQLARIPIDVRLGRM
VIEAGRSTTPNTLAAVLVVVAFLSLQDPRERPEEKREDADRIHNRYADETSDFLTALNIW
DRAYGADGEMSSHALRRLCKTEYLHFLRMRQWRDLVSQLRELCRELKFNVGEPIPVSRPP
REIRELPINQQAAHSLACSWDSQGIHTSMLAGLLSMMGMQVVHEPKASDFTGLKGAARAR
AMKRAQKMAKNDYLGARGTHFAIFPASALSKSTPSWVMSTELVQTSRLWARYCAAIDPAW
AEPLAGNLTRTTYANPHWSASRGSAVAESNVLLYGLPIVQGRTVQWGRINPLEARDFLIR
QGLVEGEIQQRFAHDEFIDANRAVIEEAQEESNRTRQVAQTVSDEDLYDFYNEVIPNTVT
CVADLAKWWKGEFEAHPHLLDFDPSKVERLLDQESVSMEDFPDHWVTVGSDERVIELRLS
YVYDTHDPADGVTVHIPLGVLSRISAPQFSWNVPGLRHELIVAMIKALPKALRVQFVPAP
DTATKIEDWIDSHFESDPGSGTLDSPAQVDGGVWPDFAHVFTQAAIEVVGAQIHPEVLDG
LADKLPPYLRMNFVIEQPKPRPKRAHRRRSYDDGVVVLGTGKSLVELQRQFAEQAQESAR
KIVHRQAQKAAEQGQVVAEADLLRKAGATTEAREEMLWRGALDRLRLPAERISSRWLGAE
ALMLASAPYSTTKALADDLQLQTVKRLLPDIAKLSSDEALSEAVDGVKEVFEDAVYEVAK
DAIEVLRAYAQVDKAVSGKADLPMLSVLQSVREHIATLVHPGFIGATPPDSFRRLPVYLQ
ADMSRLSKAKTDKNRDVRWAWQADEAKQIVDKALEKARKEPAGAKHDELMAKALKARWML
EEFYVSLWAQELGTPYPVSVQRIQKALR
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaataccccgatcagctgcctgtctcggccgcgcgcgaagccattgccaat
gcggtgcgttccagccaggtggtgatcatctccgggcagaccggttccggcaagaccacg
cagctgccgaagatcctgctcgaactcggtcgcggctcgcatggcaagcagattgtgcac
acgcagccacgccgtctcgccgcgcgcaccgtggccgaacgcatcgccgatgagatgggc
gtgcacctgggcgacgaaatcggctaccaggtgcggttcaccgacgaaagctcgccgaag
acacgcctgcgcgtggtcaccgacggcattctgctcgcgcagatccaacgcgatccgaaa
ctgacacgctatgacacgatcatcatcgacgaggcgcacgaacgcagtctcaacatagac
ttcctgctcggctatctcaccgccctgctgccgttgcgccgcgacctgaagctcatcatc
acctccgcgacgatcgattcggtgaagttccagaagcatttcgaagacgcactgcacacc
aaggtgccggtgatcgaggtctccggccgcacgtacccggtcacgatctgctatgagccg
ctgggaggcacccccgcgctgatgaggcatgttcccgggttcgcggacggaacgtccggc
gacgacatcacgaacccggacgccgaggcaatggacatgcccaccgcggtcgcgcgcgca
tgcaccgaattggcgattctctccacgcacgaccaagggccacgcgacattctcgtgttc
gcctccggcgagcgcgacatccgcgacttcgagcaggcgctccgccatcatttcggcccg
cgtgccgccgacatgcgcaggccggacgccattgagatcgtgccgctgttcgcacgtctg
agcgccaaggaacagcatcgtgtgttcgaaccgcatacgcaccagcgcatcgtcatcgcc
acgaacgtggccgagacgtcgctcacggtgccaggcatacgctatgtggtggatccgggt
aacgcgcgtatctcgcgctattcgaagcaggcgaaggtacagcggctgcccatcgagccg
atctcacaggcaagtgccgatcagcgttcgggccgctgcggccgcatcgccgacggcatt
gcgatccgtctgtattcgagtgaggattacgagtcacgcccgcgtttcaccgagccggag
attctgcgcacatcgctcggcgcggtcgtgctgcacatgctctcggtgggcgtggcgaag
acggcggaggacatcaccgatttcggattcatcgacccgcctgacatcaaggcggtttcc
gacggcatcaacgaactcaccgaattgcgtgcgatctctcgcaaacgcggcgtcatgcaa
ctgacgcacaccgggcgccagcttgcgcgcataccgattgacgtgcgtctgggccgcatg
gtgatcgaggccggccgctccaccacaccgaacaccttggccgccgtgctcgtcgtcgtg
gcgttcctgagcctgcaggatccgcgtgaacgccccgaggagaagcgcgaggatgcggat
cgcatccacaaccgctacgccgacgagaccagtgattttctcaccgcactgaacatatgg
gaccgcgcatatggggcggatggcgagatgagcagccatgcactgcgcaggctgtgcaag
actgaatacctgcatttcctgcgtatgcgccagtggagggatctcgtctcgcagctgcgc
gaactgtgccgcgaactcaagttcaatgtgggcgaaccgattccggtgtcgcgaccgccg
cgtgagatccgggaactgccgatcaaccagcaggctgcgcattcgctcgcctgttcatgg
gacagtcaaggcattcacacttccatgttggccggtctcctctcgatgatgggcatgcag
gtcgtgcatgagccgaaggcgtccgatttcaccggtctcaagggtgccgcccgagcgcgg
gcgatgaaacgtgcacagaagatggcgaagaacgattacttgggtgcgcgaggcacgcat
ttcgcgattttcccggcgtcggcactctcgaaatccacgccgagctgggtgatgagcacc
gaactcgtgcagacgagccggctgtgggcgcgctactgcgctgcgatcgaccctgcgtgg
gcggagccgctcgccggcaatctgacccgcaccacgtatgcgaacccgcactggtccgcc
tcacgtggctccgcagtggcggaatcgaatgtgctgctgtatgggctgcccatcgtgcag
gggcgcaccgtgcagtgggggcgcatcaacccgctcgaggcacgtgatttcctgattcgt
cagggacttgtggaaggtgagattcagcagcggttcgcgcacgacgagttcatcgacgcc
aaccgggcggtcatcgaggaggctcaggaggagtcgaatcgcacacgtcaggtggcgcag
acggtgagcgacgaggatctgtacgatttctataacgaggtgatcccgaacacggtgacc
tgcgtggctgacctggcgaaatggtggaagggcgaatttgaggctcacccgcatctgctt
gatttcgacccgtccaaggtagagcggctcctcgaccaggaatcggtgagcatggaggac
ttccccgaccactgggtcaccgtcggttccgacgaacgtgtgatcgagctgcggctgagc
tacgtttacgacacgcacgatccggcggacggcgtcaccgtgcacattccgctcggcgtg
ctctcacgcatctcggcaccgcagttcagctggaatgtgcccgggctgcgtcatgagctc
attgtggcgatgatcaaggcattgccgaaggcgctgcgcgtgcagttcgtgccggcgcca
gacaccgcgacgaagatcgaggactggatcgactcccatttcgaatccgacccgggttcc
ggcacactggactcccccgcacaggttgacggaggcgtgtggccggatttcgcgcacgtg
ttcacgcaggccgccatcgaggtggtcggggcgcagattcacccggaggtgctcgatggc
ctcgccgacaagctgccgccatacctgcgcatgaatttcgtgatcgagcagccgaagcct
cggccgaagcgtgcccaccgccgccgttcgtacgacgatggcgtggtggtgctcggcaca
ggcaagtcgctggtcgagctacagcgccagtttgccgaacaggcgcaggaatccgcacgc
aaaatcgtgcaccggcaggctcagaaggccgccgagcaggggcaggtggtggccgaggcg
gatctgctgcgcaaagccggtgccaccacggaggcgcgtgaggagatgctctggcgaggg
gcgctcgatcggctgcgcctgcccgccgaacgcatctcgtcacgctggctcggtgccgag
gccctcatgctcgcatcggcgccgtattcgaccacaaaggcgctcgccgacgacctgcag
ttgcagacggtgaagcgattgctgccagatattgcgaaactgagctccgacgaggcgttg
agcgaggccgtggatggcgtcaaggaagtgttcgaggacgccgtgtatgaggtggccaag
gacgcgatcgaggtgctgcgggcctatgcgcaggtagacaaggcggtcagcggcaaggcc
gacctgcccatgctctcggtgctgcagtcggtgcgcgaacacatcgccacactcgtgcat
cccggtttcatcggtgccacgccgcccgattcattccgcagactgccggtctacctgcag
gccgacatgagcagactctccaaggcgaaaaccgacaagaaccgcgatgtgcgctgggcg
tggcaggccgacgaagccaagcagatcgtcgacaaagcgctcgaaaaggcacgcaaggag
ccggccggagccaagcacgacgagctcatggccaaggcgcttaaggcacgctggatgctc
gaggagttctacgtgtcgctctgggcgcaagagctcggcactccttacccggtaagtgtg
cagcgcatccagaaagccttgcgatag
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