Bombiscardovia nodaiensis: KIM372_02830
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Entry
KIM372_02830 CDS
T09715
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bnk
Bombiscardovia nodaiensis
Pathway
bnk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bnk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KIM372_02830 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bnk03019
]
KIM372_02830 (pnp)
03016 Transfer RNA biogenesis [BR:
bnk03016
]
KIM372_02830 (pnp)
Enzymes [BR:
bnk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KIM372_02830 (pnp)
Messenger RNA biogenesis [BR:
bnk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KIM372_02830 (pnp)
Transfer RNA biogenesis [BR:
bnk03016
]
Prokaryotic type
tRNA degradation factors
KIM372_02830 (pnp)
BRITE hierarchy
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH_2
S1_2
Motif
Other DBs
NCBI-ProteinID:
BDR52376
LinkDB
All DBs
Position
424489..427215
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AA seq
908 aa
AA seq
DB search
MEGPEIKAVEATIDNGSFGKRTVRFETGRLAQQADGAVAAYLDDDSMVLSTTTAGSSPKE
NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSTEAILACRLIDRPLRPLFPHTFRNEVQ
VVETVLALDPDDTYDVLALNAASASTMISGLPFEGPVSGLRLALIDGQWVAFPRWSERER
AVFELVVAGREIEGGDVAIAMIEAGAGKNAWTLIYDEGQMKPDEAVVAEGLEAAKPFIKV
LCQAQNELKAQAAKPTKEFQLFPEYTDELYARIDQIAHADLDEALSIAEKLPRQDRIHDI
KEQVREQLSTEFMDMDEAEKEKELGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSA
EVDIVPRVHGSALFQRGETQVLGITTLNMLKMEQTVDALSGPATRRYMHNYEMPPYSTGE
TGRMGSPKRREIGHGNLAERALIPVLPSREDFPYAIRQVSEAIGSNGSTSMGSVCASTLS
LLAAGVPIKAPVAGIAMGLVTGEVDGKPTYKTLTDILGAEDAFGDMDFKVAGTSEFITAL
QLDTKLDGIPADILAGALQQAKEARTTILEVLDECIDEPAEMSPYAPRIITTTVPVDKIG
AVIGPKGKMINQIQEDTGAEVSIEDDGTVYISSEGGEAAQKAKETIDQLVNPHLPETGET
YNGKVVKTTSFGAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLQEGDEVQVIVQGVD
DRGKISLAIPGFEDQESNRGGHDRSERSGRRDHDRGGRYEHRDRDHDRDRDHSRSRHAAR
PSHFEDDDVVEVEESFDEPEVSSRPRHRREDRDYERDERGGHDRSERSGRREHDHSSRYE
HHDRSDHRDGDRRHERSTGRSGGYRGRRENPRYAADEHYDEYEAGREERTERPRRRVRRD
FDPFDDED
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgaaatcaaggctgttgaagccacgattgacaatggttcatttggcaag
cgcacggtgcgcttcgagacaggtcgtctcgcccagcaggcggatggggcagtagccgct
tatttagatgatgattcgatggtcttgtcgaccactaccgccggttccagccccaaggag
aattacgacttcttcccgctgactgtcgacgttgaagagaagatgtatgccgcgggtaag
atccctggctccttcttccgccgcgaaggccgtccttcaactgaagccatcttggcttgc
cgcttgattgaccgtcctctgcgccccctcttcccccacaccttccgcaatgaggtgcag
gttgtggagactgttctggctctcgatccagatgacacttacgatgtgctagcgctcaac
gctgcctccgcttcgaccatgatttctggcctgcctttcgagggcccggtctccggtctg
cgcctggctctgattgacggccagtgggttgctttcccgcgttggagcgagcgcgagcgc
gccgtcttcgagctggttgtagccggccgtgagattgagggtggcgacgttgctatcgcc
atgattgaagcaggcgctggcaagaacgcctggaccttgatttacgacgagggccagatg
aagcccgacgaagctgttgtagctgaaggtttggaagctgctaagcctttcattaaggtg
ctctgccaggcccagaatgagctcaaggcccaagctgccaagcccaccaaggagttccag
ctcttccccgagtacaccgacgagctctatgcccgtatcgaccagattgcccacgctgac
ttggacgaggcgctctccattgcggagaagctgccccgccaggaccgcatccacgacatt
aaggagcaggtgcgcgagcaactgtccaccgagttcatggatatggacgaggccgagaag
gaaaaggagctgggcaatgcctttaaggagctccagcgccagatcgttcgccgccgcatc
ttgactcaggactaccgcattgacggccgtggcctgcgcgacatccgtaccctgtctgcc
gaggtagacattgtgcctcgtgtgcacggttctgccctcttccagcgcggtgagacccag
gtattgggtatcactaccctgaacatgctcaagatggagcagacggttgacgccctctcc
ggccctgcaacccgtcgctacatgcacaactacgagatgcccccatattcgaccggcgag
acgggccgcatgggctctcccaagcgccgcgaaattggccacggcaacctggcagagcgc
gctctgattcccgtgctgcctagccgcgaggacttcccctacgctatccgtcaggtctct
gaggccatcggttccaacggttccacctccatgggttcggtctgcgcttccacgctctcc
ctgctcgctgctggcgtgccaattaaggctcctgtcgctggtatcgccatgggcctggtc
accggcgaggtagacggcaagcctacctacaagaccctgactgacatcttgggtgccgag
gatgccttcggcgacatggacttcaaggtggctggcacctctgagttcatcaccgccctc
cagctggacaccaagctcgacggcattcctgctgacatcttggctggcgccctgcagcag
gctaaggaagctcgtaccacgattctcgaagtgctcgacgagtgcatcgacgaacctgct
gagatgagcccatacgctcctcgcatcatcaccaccacggtgcctgtcgacaagattggt
gcagtcattggccccaagggcaagatgatcaaccagattcaggaagacactggtgctgag
gtttctattgaggacgacggcacggtctacatctcctccgagggcggcgaagctgctcag
aaggccaaggagactatcgatcagctggtcaatcctcatctgcctgagactggcgaaacc
tacaacggtaaggttgtgaagaccacgagcttcggcgctttcgtcaacttgacccccggc
accgacggtctgctgcacatttcgcagattcgcaacctggccaacggtgagcgtatcgat
gctgtggaagacgtgctccaggaaggtgacgaagttcaggtcatcgtccagggtgtggac
gatcgcggcaagatttcgctggcgattcccggctttgaagaccaagagtcgaaccgcggt
gggcatgatcgctccgagcgttcgggccgtcgcgaccacgaccgtggtggccgctatgag
caccgtgaccgtgaccacgatcgtgaccgtgatcattctcgctcccgccacgccgctcgc
ccctcgcactttgaggatgacgatgtggtcgaggttgaagagagtttcgacgagcctgag
gtttcgagccgcccccgtcaccgccgtgaagaccgtgactatgagcgcgatgagcgtggt
gggcatgatcgttctgagcgttccggtcgtcgtgagcacgatcactccagccgttacgag
catcatgaccgttccgaccaccgtgacggtgaccgccgtcatgagcgttcgacaggccgc
tccggtggctatcgtggccgtcgtgagaacccccgttatgctgccgatgagcactatgac
gagtacgaggctggccgcgaagagcgcactgagcgcccccgtcgtcgtgtccgtcgtgac
ttcgaccccttcgacgatgaggactga
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