Bombiscardovia nodaiensis: KIM372_03860
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Entry
KIM372_03860 CDS
T09715
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
bnk
Bombiscardovia nodaiensis
Brite
KEGG Orthology (KO) [BR:
bnk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bnk03016
]
KIM372_03860 (truB)
Enzymes [BR:
bnk01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
KIM372_03860 (truB)
Transfer RNA biogenesis [BR:
bnk03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
KIM372_03860 (truB)
Prokaryotic type
KIM372_03860 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
PseudoU_synth_2
DKCLD
Motif
Other DBs
NCBI-ProteinID:
BDR52479
LinkDB
All DBs
Position
536881..537933
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AA seq
350 aa
AA seq
DB search
MKSGILIVDKPQGVTSHDLVAAVRARLGLRRVGHAGTLDPMATGVLVIGFGQATRLLNAI
VGHDKTYEATIRLGQATDTDDADGHLLPPEPGAGERIQELSQGQIEAAIAHYTGDIEQVP
NAYSAIKVHGQRAYDLARQGQAVELKARTITVSEYKLLRLTRTRAQVSLDDPSKESAEQE
DASQPVIDLQVRVSCSSGTYIRALGRDLGAELGVGGHLTRLRRVRVGRFDLSNPALAARV
ITAHVVEHTFTDRQGQVQTRNKAMLDQDRAEIQARALGLVDGAKLTMPTLAVSSEQAQEL
EHGQFLPLSITEPTAAILTGTDGSEQLVGLLEPRGSHSAKPSAVFALANE
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcggaatactgatagtagacaaaccccagggcgttaccagccacgacctggtg
gctgccgttcgcgcccgtctgggcctgcgcagggtggggcacgccggtaccctagacccc
atggcgacgggcgtgctggtgattggctttgggcaggctaccaggctcctgaacgccatc
gtgggccatgacaagacctatgaagccactatccgcttggggcaggccacggacaccgac
gacgctgacgggcacttactcccccctgagccaggagcaggggagcggatccaagagctg
agccagggccaaatcgaggcagccattgcccattacactggcgacattgagcaagtgccc
aacgcttactcggccatcaaagtgcacgggcagcgggcatacgacctcgcccggcaagga
caggccgttgagctcaaggcccgcacgattacggtcagcgaatacaagctccttcggctc
acccgcacgcgggcacaggttagcttggatgaccctagcaaggagagtgccgagcaggag
gacgcgagtcagccggtcattgacttgcaggtgcgcgtctcctgctcgtcgggtacctat
atccgtgctctgggccgagatttaggcgctgagctgggtgtgggcggtcacctgaccagg
ttgcgacgggtgcgcgtagggcgcttcgatttaagcaatccagcgctcgccgcccgcgta
atcaccgcacatgtggtagagcacaccttcaccgaccgccaggggcaggtgcagacgcga
aataaggccatgctggaccaggatagggcggaaatccaagcgcgcgccctgggcctggta
gacggcgcgaaactgaccatgcccacgctcgctgtgagctccgagcaggcccaggagctg
gagcacggccaattcctgcctctgagcattacggagcccacagcggccattttgaccggc
acagacggcagtgagcagctggtgggactcttagagccgcgcggcagccacagcgctaag
ccttcagccgtgttcgccttggcaaatgagtaa
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