Bombiscardovia nodaiensis: KIM372_07720
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Entry
KIM372_07720 CDS
T09715
Name
(GenBank) hypothetical protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bnk
Bombiscardovia nodaiensis
Pathway
bnk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bnk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KIM372_07720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bnk03400
]
KIM372_07720
Enzymes [BR:
bnk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KIM372_07720
DNA repair and recombination proteins [BR:
bnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KIM372_07720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BDR52865
LinkDB
All DBs
Position
987855..989747
Genome browser
AA seq
630 aa
AA seq
DB search
MPADQLDQVSKYIGSEAPKLNKLGGSDWAQTKAKAKKHVHEIAQDLVKLYSARQRTRGFA
FSPDTPWQKELEDAFPYQETPDQLTAIDEVKRDMERPVPMDRLICGDVGFGKTEIAIRAA
FKSVQDAKQVVVLVPTTLLVQQHYQTFTERYEGFPVTVGQMSRFQSAKENQETMAGLADG
TIDIVIGTHKLLNPKIKFKDLGLMIIDEEQRFGVEDKETLKAIRTNVDVLSLSATPIPRT
LEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQITAAIRRELLRGGQVFFIHNRVEDI
AKVSAKVHELVPEARVGVAHGKMGEKQLDAVIQDFWHRDVDVLVCTTIVETGLDIPNANT
LIVDRADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPMTQTAHDRLATIAQHTALGSG
YDVAMKDLELRGTGNLLGSEQSGHIEGVGFDLYVRMVSQAVEEYKEPERKESLSVAIDLP
VEASIPVDYIDSDKLRLEAYRKLASAQDEGDLQELYEELSDRYGTPPAEFETLFAVARLR
AQARALGISEINGQSSRVRVGKIDMPESLQIRIGRIYKGSRYHPVTQTLLVPAPFAGSMG
AKPMGSMEILAWTAQLLDDLAWKHEGSSQA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgccgaccagctggaccaggtgagcaaatatataggctcggaggcccctaagctc
aacaagttggggggctcggactgggcgcagaccaaggccaaggccaaaaaacacgttcac
gagattgcccaagacctggtcaagctctactcggcccgtcagcgcacgcgcggcttcgcc
ttcagccccgacacgccctggcagaaggagttggaggatgccttcccctaccaggagacg
cccgaccagctgacagccattgacgaagtcaagcgagacatggagcgcccggtgcccatg
gaccgcttaatctgcggcgatgtgggctttggcaagaccgaaatcgccatccgcgcggcc
tttaagtccgtgcaagacgccaagcaggtggtggtactcgttcccacgaccttgctggtc
cagcagcactatcagacctttaccgagcgctacgagggcttcccggtcactgtggggcag
atgagccgcttccagtcggccaaggagaaccaggagaccatggctggcttggccgatggc
accattgacatcgttattggcacccacaagctcttgaaccccaaaatcaagttcaaagac
ttggggctcatgatcattgacgaggaacagcgcttcggcgtggaagacaaggagaccctg
aaggccatccgcacgaatgtggacgtgctctccctgtcggccaccccgattcccaggacc
ttggaaatggcggtcacgggcatccgcgagatgtcaaccctggccacgccgcccgaggac
cgtctgccggtcctgacctacgtgggcgcctatgaggacgctcagattacggctgccatc
cgccgggagctcttgaggggcgggcaggtcttctttattcataaccgggtggaggacatt
gccaaagtctctgccaaggtgcacgagctggtacccgaggcgcgggttggtgtggcccac
ggcaagatgggggagaagcagctcgacgcggtcatccaggacttctggcaccgggacgtg
gacgtgctggtttgcaccacgattgtggagactggcttggatatccccaacgccaacacg
ctgattgtggaccgggctgatcgctttggtctctcccagctccaccagctgcgcgggcgg
gtgggccgtggccgcgagcgcgcctacgcctacttcctctacgacccctcgaagcctatg
acgcagaccgcccacgaccggctggctacgattgcccagcacacggccctgggttcgggc
tacgacgtggctatgaaggacttggagttgcgcggcacgggcaacctcttgggctcggag
cagtctgggcacattgagggcgtgggcttcgacctgtacgtgcgcatggtctcccaggcg
gtggaggagtacaaggagccggagcgcaaggagtcgctgtcggtcgccattgacctgccg
gtggaagcttccattccggtggactacattgactcggataagctgcggctggaggcctac
cggaagctggcgtctgcgcaagatgagggcgacctgcaggagctgtacgaggagctttcc
gaccgctatggcacgccgccagctgagtttgaaaccctcttcgctgtagctcgtctgcgc
gctcaggcccgggcgctgggcatcagcgaaatcaacggtcagtccagccgggtgcgggtt
ggcaagattgatatgcctgagtccctgcaaattcggattgggcgcatttataagggctcg
cgctaccatccagtgactcagaccctcctggtaccggctccttttgcggggagtatgggt
gccaagccgatgggttcgatggaaattttggcctggaccgctcagctcttagacgatttg
gcctggaagcatgaaggtagttctcaagcatag
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