Bombiscardovia nodaiensis: KIM372_08440
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Entry
KIM372_08440 CDS
T09715
Symbol
pcrA
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bnk
Bombiscardovia nodaiensis
Pathway
bnk03420
Nucleotide excision repair
bnk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bnk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KIM372_08440 (pcrA)
03430 Mismatch repair
KIM372_08440 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bnk03400
]
KIM372_08440 (pcrA)
Enzymes [BR:
bnk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KIM372_08440 (pcrA)
DNA repair and recombination proteins [BR:
bnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KIM372_08440 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
KIM372_08440 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
HI_0552
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
BDR52937
LinkDB
All DBs
Position
1073286..1075949
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AA seq
887 aa
AA seq
DB search
MFEEADLIQRSADDLLAGLNPQQAQAVQYRGPALLIGAGAGSGKTRVLTRRIAWILSQFG
AWPSQVLAITFTNKAAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKEIGLKSGF
SIYDTADSERLIKLIGRDLNVDLKRYTPRNILSHISDYKNNLQTWSDQLAAFAPDYKPGH
RGQQITARFGNEEELYSIFYAEYEYRLAQANAVDFDDLIMRTVELLRSAPLVAQYYHHKF
RYILVDEYQDTNHAQYVLLRELAGVDGDAAAASSAQQEAQAGLARAGSRPLAAGKEGPAW
ITVVGDSDQSIYAFRGADISNIRDFEKDFPGAKTIMLEQNYRSTQTILDAANAVIVKNSS
RKPKKLWTALGKGEPIVGYAADNAQQEAAWIATEIARLRSEEDMPYSDMAIMYRANAQSR
PLEEALINAGLPYQLVGGTKFYERREVKDALAYLQAIANPDDDVNLRRILNVPKRGLGAR
AESMVSSYADMHNSSFWEGVEHYEQIEGLASLTAKKLEAFRSLMEGLRTFAAEHDNKPSE
IVAQVLDASDMLAQLRMSNDPQDASRVENLSQLQSVAAEFEQKTPDATLAGFLETTALVA
DSDQLPGINEESGKVTLMTLHTAKGLEYPVVFLTGMEQGTFPHSLSLEDESELEEERRLA
YVGITRAKQRLYLTRASVRAQWGQANEMLPSQFLDDIPEDLIDWKRRQSSIERMQSGWSL
GGSDDEFGEFEQDEFDSSPVFGSSHSSFGGSSSQRAYGSYSESSSRRTGSSYGGLSSSRG
SRSSGSSWSYGHGGGHGYSSSKAGSKSGRVTTQRVKPAHTSTSPAPASGSKLSISDFQRG
DKVAHDQYGLGTVVDLQDKGPNSVLTVDFGSDGTKRLLLRVAPIEKL
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgaagaagctgacttgattcaacgcagtgcggacgatttgctggcgggcttaaac
ccccaacaggctcaggccgtgcaataccggggtcctgccctgctcattggtgctggagca
ggttcgggtaagacacgcgtgttgactaggcgcattgcttggattctgagccagtttgga
gcctggcccagccaagtgctggccatcactttcaccaacaaggctgcggcagagatgcgt
gagcgcttaggctctctgattggtccagtggcgcagcggatgtgggtgtccaccttccac
tcggcatgcgtgcgcatcttgagacgagacggcaaagagattggcttaaaatcaggcttt
tccatctacgacacggccgatagcgagcgactcatcaagctcattggcagggacctcaac
gtagacctcaaacgctatacacctcgtaatattttgtcgcatatttctgactataaaaat
aacttgcaaacctggtccgaccagcttgcagcctttgcgccggactataagccgggacac
cggggtcagcagatcaccgcccgctttggcaacgaagaggaactgtactctatcttctac
gccgagtatgagtaccggctcgcccaggcgaacgcagtggatttcgacgacctcattatg
cgcactgtcgagcttctgcgttcggcacccctggtggcccagtactaccaccataagttc
cgctacattctggtagacgagtaccaggacactaaccacgcccagtacgtgctcttgcgt
gagctggctggcgtggatggggatgctgctgccgcctcttctgcccaacaagaggcacag
gcgggcctggccagagcaggcagccgacccctggcagccgggaaggaaggccctgcctgg
attacggtagtgggtgattccgaccagtcaatttacgctttccgcggggcggatattagc
aatattcgcgactttgaaaaggatttccccggcgcgaaaacgattatgctggagcaaaat
taccggtcaacgcagacgattttggatgcggccaatgcggtgattgtcaagaactcctcc
cggaagcccaaaaaactgtggactgccctaggcaagggggagccgatcgtggggtatgcg
gcggacaacgcccagcaggaggccgcctggatagctaccgaaatcgcccgcctgcgctcc
gaggaggacatgccctattctgacatggcgattatgtaccgggccaacgcccagtcgcgc
cccctggaagaagccttgattaacgctggcctgccctatcagctggttggcggcactaag
ttctacgagcgccgggaagtgaaagacgctctggcatacttgcaggccattgccaaccct
gacgacgatgtgaacctccgtcgcattctgaacgtgcctaaacgcggacttggcgcccgt
gccgaatctatggtttcctcatatgcggatatgcataattccagcttctgggagggcgtt
gagcactatgagcagattgagggacttgcgagtctgacggcgaaaaagttggaggccttc
cgctcactgatggagggcctgagaacgtttgcagccgagcatgacaacaaaccttctgag
attgtggctcaagtcctagatgcttccgacatgctggctcagctgcggatgtcgaacgac
ccccaagacgcttcgcgggtggaaaatctttctcagctccagtcggtagcggctgagttt
gagcaaaaaacgcccgatgccactctggcaggttttttggaaacgacggctctggtggcc
gactctgaccagctgcctggcatcaatgaagaatctggcaaggtcacgctcatgaccttg
cacacggccaaaggcttggaatacccggtcgtgttcttaacggggatggaacaaggcacc
ttcccgcactccctctctctggaggacgagagcgagctggaagaggagcggcgcctggct
tacgtgggtatcactcgtgccaagcagcggctctacctgacgcgcgcttcggtgcgggcc
cagtgggggcaggccaatgagatgctccccagtcagttccttgacgacatcccagaagac
ctcattgattggaagcggcgacagtccagcatcgaacggatgcagagcgggtggagtctg
ggcggtagcgacgacgagttcggcgagtttgagcaagatgagtttgactcttctccagtg
ttcggctcttcgcattcaagttttggcggctccagctcccagcgtgcttacgggtcctat
agcgagagcagcagcagacgtaccggctccagctatggtggtttgagcagttcacggggc
tctcggtcgtcgggaagttcctggtcatatgggcacggcggcgggcacggctatagctcc
agcaaagctggcagtaagagtgggcgggtaactacgcagcgggtgaagcccgcgcatacg
agtactagcccggctccagcgtccggttccaagctcagcatcagcgatttccagcgggga
gacaaggtagctcacgaccaatatggcttgggcaccgtagttgacctgcaagacaaggga
cccaattcggtgctgacggtcgattttggctcagatgggaccaaacgactactcctgcga
gtggcgcctatcgaaaaactgtga
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