Bombiscardovia nodaiensis: KIM372_13110
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Entry
KIM372_13110 CDS
T09715
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bnk
Bombiscardovia nodaiensis
Pathway
bnk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bnk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KIM372_13110 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bnk03019
]
KIM372_13110 (rnj)
Messenger RNA biogenesis [BR:
bnk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KIM372_13110 (rnj)
BRITE hierarchy
Motif
Pfam:
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
BDR53404
LinkDB
All DBs
Position
complement(1647890..1649785)
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AA seq
631 aa
AA seq
DB search
MEMAKNTTEDSTSEAADRKGSKTRSRSNSSHAGKKTGGRAQSGSRGGQRRGGSRGGRRPD
VKPAKPELIAPPKYRKGSMRITPLGGLGEIGRNMNVIEYNGHILLVDCGVLFPEEEQPGV
DLILPDFSYIKDKLDQVDALVLTHGHEDHIGGVPYLLKLRPDIPLIGSKLTLAFVDAKCE
EHNQHPTEVEVKGRDKLKVGPFNLEFVAVTHSIPDALAVSIRTPAGHVIDTGDMKIDPLP
LDHRLTDLREFAKLGESGVDLLMIDSTNAEVPGFVKPEISIAPALDKAFSEAQRKIIVAS
FSSHVHRVQQVVDAAHKHGRKVVFAGRSMVRNMGIASDLGYLHLPEDTVVDLKDAHNYPD
DKIVYMLTGSQGEPMAALGRIADGTHRDISINEFDTVIMASSLIPGNEHGVYKVINKLIR
LGARVVNRDNAAIHVSGHSDEGELLHFYNIVQPKCAMPIHGENRHLVANGLIAVKTGVDP
QNVVLAEDGDVVDLYHGKAAVVGSVPCAYVYVDGDSVGELTDDELEQRRILGTEGFVSAF
AVVDTEVNQVVSGPKVYLNAVAEDEREFRTIEDQVVAQLEEAMASGTHDTYKLQQLMRRT
LGGWISRKLHRRPVIVPVVADIATDVQEPAK
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
gtggaaatggcaaagaatacaacagaagatagtacgagcgaagcagccgaccgtaagggc
agcaagacccgctctcgcagcaacagttcacatgctggcaagaagactggcggcagggct
caaagcggctctcgtggcggccaacgccggggtggttcccgcgggggcagacggccagat
gtcaagcccgccaagccagagctcatcgctcctcccaagtaccgcaagggttctatgcgt
atcacacccctgggcggcctgggcgaaattggccgcaatatgaacgtgattgagtacaac
ggtcacattctgctggtggactgcggtgtgctcttccccgaagaggaacagccgggcgtg
gacctgattctgcccgatttttcgtacattaaggacaagctcgaccaggttgatgcgctc
gtattgacccacggtcatgaggaccacattggtggcgtgccctatctcttgaagctgcgt
ccggacatcccgctgatcggctccaagctgacgctggctttcgtggatgccaagtgcgag
gagcacaatcagcacccgaccgaggtggaggtcaagggccgcgacaagctcaaggttgga
cctttcaacctggaatttgtggctgtaacgcactcaatcccagacgcgcttgccgtttcg
attcgcacccctgccggccatgtgattgacacgggcgacatgaagattgacccgctcccg
cttgatcaccggctcaccgacttgcgtgagttcgccaagctgggcgagtctggcgtggac
cttttgatgattgactccactaacgccgaggtgcctggttttgtgaagcccgagatttcc
atcgctccggcgctcgacaaggcgttttctgaggcccagcgcaagattattgttgcctcg
ttctcctcccatgttcaccgcgtgcagcaggtggttgatgccgcccacaagcacggccgg
aaggtggtcttcgcgggccgctctatggtgcggaacatgggtatcgcctctgacttgggc
tacctgcacctgccggaggacacggtggtggacttgaaggacgctcataattaccccgat
gacaagattgtctacatgctcactggttctcagggtgagcctatggccgcgctcggccgc
attgccgacggcacgcaccgagacatctctatcaatgagttcgacaccgtgattatggct
tcttcgctgattcctggcaacgagcacggcgtctacaaggtcatcaacaagctgattcgc
ctgggtgcgcgcgtggtcaaccgcgacaacgcggccatccacgtctccggtcactccgac
gagggcgagctcctgcacttctacaacattgtgcagcccaagtgcgccatgcctatccac
ggcgaaaaccgccacctggtggccaatggcctgattgctgtcaagactggcgtggacccg
cagaacgtggtcttggctgaggacggcgacgtggtggacctttaccatggcaaggcagcg
gttgtgggctccgtgccctgcgcctacgtgtatgtggacggcgactcggtgggtgagctg
actgatgacgaacttgagcagcgccgcatcttgggcacggaaggctttgtctcagctttc
gcggtggtcgacactgaagtgaaccaggtggtctcaggaccgaaggtgtacttgaacgct
gtggccgaggacgagcgtgagttccggaccattgaggaccaggttgtggctcagttggaa
gaggctatggcttccggcacccacgacacctacaagctccagcagctcatgcgtcgtacc
ttgggtggttggatctcccgcaagctccaccgtcgcccggttatcgtgccggtagtggcc
gatatcgccaccgacgtccaggaaccagccaagtag
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