Bombiscardovia nodaiensis: KIM372_13250
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Entry
KIM372_13250 CDS
T09715
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bnk
Bombiscardovia nodaiensis
Pathway
bnk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bnk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KIM372_13250 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bnk03021
]
KIM372_13250 (rpoC)
03400 DNA repair and recombination proteins [BR:
bnk03400
]
KIM372_13250 (rpoC)
Enzymes [BR:
bnk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KIM372_13250 (rpoC)
Transcription machinery [BR:
bnk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KIM372_13250 (rpoC)
DNA repair and recombination proteins [BR:
bnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KIM372_13250 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
FadA
Ac81
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
BDR53418
LinkDB
All DBs
Position
complement(1675393..1679598)
Genome browser
AA seq
1401 aa
AA seq
DB search
MLDVNAFDKLRIGLATADDIRSWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTKVDDGQRHQDLPDLQDEFDNEINQLEKKRDAEIDKRAKKLEED
LAQLEQSDEAKGSMKSRLRNGAERDMTNIRKRYDEQIQRITAVFDRFKDLKPGDMEGDVD
LWREMQDRYGDYFEGCMGAEAIKERLKAFDLESSAKELREEIATGSGQRKARALKRLKVV
NAFLTTGNSPAAMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLADMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DAAVWGVLEEVIAEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMLASDNILKPADGHTVTMPSQDMILGLYFLTTVVDGAKGQG
RIFSSMAEARMALDLGEIDMEAKILLRVPADFVMPKNWEPGELKVVDPEPGSPDVVKEEV
FKDGTKLFATNYGRVLFNRTLPVDYPFINEQVAKGKLAGIVDDIATRYSTAQVAASLDAL
KDLGFTRAPWSGVTMAFSDIVVPPDRSAIIKDYEGQAAKVNSQYDMGLLTNEERRQELIN
LWTECTDKVADAMRDNFHDDNNVNIMVQSGARGNWMQIRQIAGMRGLVANPKGEIIPRPV
KSNYHDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKRG
LAMKVGERDENGNVVLVKAADGGPYSRLLSEDVLDPKDGKTVLYKRDDPLSMDTLRDLVA
HGVEEVKARSVLTCESTRGVCAKCYGWSLATMRLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFPGKIKVEDTDRGRQVTLSPDDGT
IEPLTYPVTRRAPMLVKDGQHVEAGTQLIEGSVDPKKILRILGPRAAQVNIVNEVHTVYR
SQGVDIHDKHIEVIVHQMLRRVTVIDSGDTDLLPGELVDQAKFKAANISAVKAGGKPAAG
RPELMGITKASLATDSWLSAASFQETTRVLTEAALNQKVDDLKGLKENVIIGKLIPAGTG
LARYRNAKVEPDKAIRDTIYPNFGLGGDESGDLSDTDLADVDFSNIDFGDLKLGDDFNPD
DFLNDQGGQTSLDAASILPSNGQTAAESAADNDQSDQDDFGGAQTSNDPGFTDSPDQSDE
DQNGKAAPSGSSQASFSSADK
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgttggatgtcaatgcatttgacaagctgagaatcggactggccaccgccgacgacatc
cgtagctggagctacggcgaggtcaagaagcccgagaccatcaactacagaaccctgaag
cccgaaaaagatggcctctttggcgagcagatcttcggacctacccgcgactgggagtgc
gcttgcggcaagtacaagcgcgtgcgtttcaagggtatcgtttgcgagcgctgcggcgtg
gaagttacccgctcccgcgtgcgccgcgagcgcatgggccacattgagctggccgcgccc
gtcacgcatatctggtacttcaagggcgtgccgtcgcgcttgggttacctgctcgacatt
gctcccaaggacctggagaaggtcatctactttgcagcctacatggtcaccaaggtagac
gacggccagcgccaccaggacctgccggacttgcaggacgagttcgacaacgaaatcaac
cagctggagaagaagcgcgacgccgaaatcgacaagcgcgctaagaagctggaagaggac
ctggcgcagttggagcagtccgacgaggccaagggttccatgaagagccgtctgcgcaac
ggcgccgagcgcgatatgaccaatatccgcaagcgctacgacgagcagattcagcgtatc
accgccgtcttcgaccgcttcaaggatttgaagcccggcgacatggaaggcgacgtggac
ctctggcgcgaaatgcaggatcgctatggcgattactttgagggctgcatgggtgccgag
gccattaaggagcgcctgaaggccttcgatttggagagctccgccaaggagctgcgcgag
gagattgccactggttccggccagcgcaaggctcgcgcgctgaagcgcctgaaggtagtt
aatgccttcctgacgaccggcaacagcccggcagccatggttttagacgctatccctgtg
attccgcccgacctgcgtcctatggttcagctcgacggtggccgtttcgcgacctctgat
ttgaacgacctctaccgccgcgtgatcaaccgcaacaaccgtttgaagcgactgattgag
ctgggcgcgcccgagattatgctcaacaacgaaaagcgcatgctccaggaagctgtggac
tcgctcttcgacaacggccgccgcggtcgccccgtcaccggtgcttccaaccgccccttg
aagtccttggcagacatgctcaagggcaagcaaggccgcttccgccagaacctgctgggt
aagcgcgtggactactcgggccgctccgtaatcgtggttggcccatccctgcgtatgcac
cagtgcggtttgcccaagcctatggctctggagctcttcaagcccttcgtgattaagcgt
ttggttgacctgaactacgcgcagaacatgaagtctgccaagcgtttggtggaccgtggt
gacgcggctgtctggggcgtgctggaggaagttatcgccgagcatcccgtactgctgaac
cgtgcacctacgctgcaccgcttgggtattcaggccttcgagccgattttggtcgagggc
aaggctatccacctgccaccactggcttgcgccgccttcaacgccgacttcgatggtgat
cagatggcagtccacctgcccctgtccgccgaagcccaggccgaggctcgctcgctcatg
ctggcttccgacaacattctgaagcccgcagacggccacaccgtgaccatgccttctcag
gatatgattctgggcctgtacttcctgaccaccgttgttgacggtgccaagggtcagggc
cgtatcttctcttccatggctgaggcccgtatggctctggacttgggtgagatcgatatg
gaagccaagattctcctgcgtgtacccgccgacttcgttatgcccaagaactgggaacct
ggcgaactcaaggttgtagaccctgagcctggcagcccagacgtggtcaaggaggaggtc
ttcaaggacggcacgaagctgttcgcgaccaactatgggcgtgtgctcttcaaccgcacg
ctgcctgtggactaccccttcattaacgagcaggtagccaagggcaagctggcaggcatt
gtggacgacatcgccacccgctattccaccgcacaggtggccgctagcttggacgcgctg
aaggacttgggcttcaccagggctccttggtctggcgttaccatggccttctcagacatc
gtggtgcctcccgaccgctcggcgatcatcaaggattacgagggccaggccgccaaggtc
aactcgcagtacgacatgggtctgttgaccaatgaggagcgtcgccaggagctgatcaac
ctgtggaccgaatgcaccgataaggttgccgacgctatgcgcgacaacttccacgacgac
aacaacgtgaacatcatggtgcagtccggtgcccgcggtaactggatgcagatccgccag
attgctggtatgcgtggtttggtggctaaccccaagggtgagattattcctcgtcctgtc
aagtccaactaccacgacggcctatctgtcttggagtacttcatctcccagcacggcgcc
cgtaagggtctggccgatacggctctgcgtaccgctgagtctggctacctgacccgtcgt
ttggtggacgtttcccaggatgttatcgtgcgcgaagaggactgcggcactaagcgcggc
ctggccatgaaggttggcgagcgcgacgaaaacggcaacgtagtgctggtcaaggctgcc
gacggtggtccttactcccgtctgctctccgaggatgttttggatcccaaggacggcaag
accgtgctctataagcgcgacgatccgctctctatggataccctgcgcgacttggtggct
catggtgtggaagaggtcaaggcccgctccgtgctcacctgcgagtccactcgtggcgtg
tgcgccaagtgctatggctggtcgctggctactatgcgtctggttgatgtgggtgaggct
gtcggtattgtggcggcccagtccatcggcgagcctggtacgcagctgaccctgcgttcc
ttccactctggtggtgtggcttcggcttctgatattacccagggtctgcctcgtgtgacc
gagctctttgaagcccgtacgcctaagggcgaggctccgattgctgaattcccgggcaag
attaaggtggaggacaccgatcgtggccgtcaggtgaccttgtcgccagatgacggcacg
attgagcccctgacctacccggtcacccgccgcgctcctatgctggtgaaggatgggcag
cacgtcgaggctggtactcagctgatcgaaggctctgtggatcctaagaagattctgagg
attctcggccctcgtgcggctcaggtcaacatcgtgaacgaagtgcacaccgtctaccgc
tctcagggcgtggatatccacgataagcacatcgaggttatcgttcaccagatgctccgt
cgcgtcacggtcattgactctggcgatacggacctcctgcccggcgagctggtcgatcag
gccaagttcaaggctgccaacatcagtgccgtcaaggctggtggcaagcccgctgctggt
cgtccagagctgatgggtatcaccaaggcttcgctggctacggattcctggctgtcggcc
gcctccttccaggagaccacgcgcgtgctcaccgaagccgccctgaaccagaaggtcgac
gacctgaagggcctgaaggagaacgtgattatcggcaagctcatcccggctggcaccggc
ttggctcggtaccgcaacgccaaggtggagcccgacaaggctatccgcgacaccatctac
ccgaacttcggtttgggtggcgacgagtccggcgacctgtccgacactgatttggctgat
gtggacttctccaacatcgacttcggcgatttgaagttgggtgacgacttcaacccggat
gacttcctgaacgatcagggcggacagaccagcctcgacgctgcaagcatcctgccttcc
aatggtcaaacagcggcagagagtgctgctgataatgaccagagcgatcaggatgatttc
ggtggtgcccagaccagcaatgatccaggcttcactgacagcccagaccagtcggacgag
gaccagaacggtaaggcagcgccttcgggtagcagccaagcctccttctcctctgcagac
aagtaa
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integrated database retrieval system
