Bombiscardovia nodaiensis: KIM372_15550
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Entry
KIM372_15550 CDS
T09715
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bnk
Bombiscardovia nodaiensis
Pathway
bnk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bnk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KIM372_15550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bnk03019
]
KIM372_15550
03009 Ribosome biogenesis [BR:
bnk03009
]
KIM372_15550
Enzymes [BR:
bnk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KIM372_15550
Messenger RNA biogenesis [BR:
bnk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KIM372_15550
Ribosome biogenesis [BR:
bnk03009
]
Prokaryotic type
rRNA processing factors
KIM372_15550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
BDR53648
LinkDB
All DBs
Position
complement(1973639..1976929)
Genome browser
AA seq
1096 aa
AA seq
DB search
MPNRTHEDLSTGETSHNSDNNSERAERVDRQEPSQQAEQESAPRRRRGGRRVVRGTGAAD
AHVPVQVEAGKDEDESPRRRSRQSSQSAQTASAASHESQERGRGRQARGEGSSDSSEHSQ
SESERAERDESRTRSRRRTSTSRRRTSEQSHERSRADEYDEGRERADSGSEAEGSESDSS
SNRSNRSSRSNSSSRSARPSRSGQSSRGRQDREEDQPSGSSRRQSRSRAESVDDEVDEQA
ETSRSSRRRRRAQTEQGEEGDERSSGRSSRSRSRDRSRSGESQDSETREGGESDSRSQAD
TAETASSTGSSRTSGRSSRASRAQAPARPMTSLLFQEPIIPAHPVAAAEPEFEADARGES
DQEDEPQSSRRTRTRKGRTSSSGRHASRGSEREREHERESEDEFDSESEEEGQPRRRRSR
RLNAEERQAANEVELIEQDLREEAGEGSADEEEAEPTIRRRRRSRRGEEDEDEGSSSRRR
RRSEPDEDDEEGGLTRRRRRRRGAKDADEEPARRSRRQQYVDEITDIEGSTRLEAKKQRR
RDNRRERSKQTQLIEQDFLARRENVNRLMVVREKEQHTQISVIEDGTLVEHYVSDIDEVS
SVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDSTRLDGQPRRIELAFKSGDP
VLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDKERSRLKSIVAKIAP
KDMGIIIRTAAEGASEEAITKDLENLQRQWEDVESKREEFWHGKRPKLLQGEPDVAIRVV
RDIFNDDFNQLIVEGDRVYDHIEHYLQTMAPDLQDKLVRWEPEEHQGKDVFDKWQIDSQL
RKGMERQVYLPSGGSLVIDRTEAMTTIDVNTGRYIGKGKSLEETVTRCNLEAAEEIARQL
RLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRVGQ
GLVEAFSEECPTCHGRGFILHDKPTVSTKYDDPYAAKGGDPFVKTIKHAHTTKAAQETPA
PQGSSPDVKAKLAQIAAAAEKAAEDRDERDDRDEETDGELGDEGQELLASNESAQADMPS
PNSPEEDSSQDVVQEA
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
gtgccaaacagaacgcacgaggacttgtctacgggcgagacctcacacaatagtgacaac
aattcagagcgtgcagagcgcgtggaccgccaggagcccagtcaacaggctgagcaggag
agtgcgcctcgccgccgcaggggtggacgccgggtagtgcgtggcaccggagcggctgac
gctcatgtgcccgtgcaggtagaggccggcaaagacgaggacgagagcccccgccgccgg
agccgccagtccagccagagcgctcagaccgcctcggccgcaagccacgagagccaggaa
cggggccggggccggcaggcgaggggcgagggcagctcagattcgagcgagcacagccag
tctgaatctgaaagagctgaaagagacgaaagccgcacccgctcccgccgtcggacgagc
acgagccgccgccggacttccgagcaatcccacgaacgctcccgcgctgacgaatacgat
gagggccgtgaacgcgccgacagcggttccgaggcagaaggcagcgagtcagactcatct
tccaatcgttccaaccgctctagccgttcaaacagttccagtcgttccgcccgtcccagc
cggtcgggccagtcgagccgaggccgtcaggaccgcgaggaagaccagcccagtgggtcc
tcccgccgtcagtcacgctcccgggctgagtcggtagacgacgaagtagacgagcaggca
gagacttcgaggagctcgcgcagacgccgccgggcccagactgaacaaggcgaggagggc
gacgagcgttcaagtgggcgcagtagccgttcgcgcagccgtgaccgctcccggtccggc
gagagccaggacagcgagacccgcgagggcggagagtcagattcgcgctcgcaggcagat
actgctgaaactgctagctcaaccgggtccagccgcacttccggtcgttcctccagggcc
tctcgagcccaggcgccagcgcggccaatgacctctctgctcttccaggagcccatcatc
ccagctcacccagtcgcggcagctgagccagaatttgaagccgatgcacggggcgaatcc
gaccaggaagacgagcctcagagctcacgtcgcactcgcacccgcaaggggcgcacgagc
agcagtggccgtcatgccagccgcggcagtgagcgtgagcgtgagcatgagcgcgaatct
gaggacgagttcgactccgagagcgaggaggagggtcagccccgccgccgtcgctcccgt
cgtctgaacgccgaggagcgtcaggctgccaacgaagttgagctcattgagcaagacttg
cgcgaggaagctggcgaaggctctgccgacgaggaagaagccgagcctactatccgccgc
cgtcgtcgttcccgccggggtgaggaagacgaggatgagggcagcagcagccgtcgcagg
cgtcggagcgagcctgacgaggacgatgaggagggcggactgacccgtcgccgtcgccgt
cgccggggagctaaggatgccgacgaggagccagcccgtcgttcccgccgccagcagtat
gtagacgaaattaccgacattgagggctccacccgcctggaggccaagaagcagcgccgg
cgcgacaaccgccgcgagcgcagcaagcagacccagctcattgagcaggacttcctggcc
cggcgcgagaacgtcaaccggctgatggtggtgcgcgaaaaagagcagcacacgcagatt
tccgtgattgaagacggcacgctagtggagcactacgtctccgacattgacgaagtctcc
tcggtgggcaacatttacttgggccgcgtgcagaacgtgctgcccagcatggaggctgcc
ttcgtcgacattggccaggcccgcaacggcgtgctctacgctggcgaggtgaactgggac
tccacccgcttggacggccagccccggcgcatcgagcttgctttcaagtctggcgacccg
gtgctggtgcaggtcaccaaggacccgattggccacaagggcgcccgcctgacttctcag
gtcacgctcgcaggccgcttcctggtgctcgtgccctccggcggtatgacaggcgtctcc
cgcaagctctccgacaaggaacgctcgcgcctgaagtccattgtggccaaaattgccccg
aaggatatgggtatcattattcgcacggcggctgagggcgccagcgaagaggccattacc
aaggacctggagaacttgcagcgccagtgggaggacgtggagtccaagcgcgaggagttc
tggcatggcaagcgccccaagctcctgcagggcgagccggacgtggcgattcgcgtggtg
cgcgacattttcaacgacgacttcaaccagctgatagttgagggcgaccgggtgtacgac
catattgagcactacttgcagaccatggcgccggacttgcaggacaagctggtccgctgg
gagcccgaggaacaccagggcaaggacgtgttcgacaagtggcagattgacagccagctg
cgcaagggtatggagcgccaagtctacctgccttccggcggttcgctggtgattgaccgc
accgaggccatgaccacgattgacgtgaatacgggccgctacattggcaagggcaagtcc
cttgaagagacggtgacccgctgcaacctggaggcggccgaggagattgctcgccagctg
cgtctgcgcgacatcggcggcatggtgatgattgactttgtggacatggtcatgcccgca
aaccgcgatttggtgctgcgccggctggtggagtgcttggcccgcgaccgtaccaagcac
caggtggctgaggtcacgtccctgggcctggtacagatgacccgcaagcgcgtgggtcag
ggcctggtggaggccttctccgaggagtgccccacctgccatgggcgtggtttcatcctg
cacgacaagcccacggtctctactaagtacgacgacccctacgcggccaagggcggcgac
cccttcgtcaagactattaagcacgcgcacaccaccaaggcggcccaggaaacgcccgcc
ccccagggttcctcgccggatgtgaaggcgaagttggcgcagattgcggccgcagcggag
aaagctgccgaggaccgggatgagcgtgacgaccgggacgaggagacggacggcgagctg
ggcgacgaggggcaggagctcttggcttccaacgagtcggcacaggcagatatgccgtcg
ccaaattcccccgaagaggactccagccaagatgtcgtccaggaggcataa
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