KEGG   Brettanomyces nanus: FOA43_000068
Entry
FOA43_000068      CDS       T07002                                 
Name
(RefSeq) uncharacterized protein
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
bnn  Brettanomyces nanus
Pathway
bnn03020  RNA polymerase
bnn03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bnn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FOA43_000068
  09124 Replication and repair
   03420 Nucleotide excision repair
    FOA43_000068
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bnn03021]
    FOA43_000068
   03400 DNA repair and recombination proteins [BR:bnn03400]
    FOA43_000068
Transcription machinery [BR:bnn03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     FOA43_000068
DNA repair and recombination proteins [BR:bnn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      FOA43_000068
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 62193469
NCBI-ProteinID: XP_038776332
UniProt: A0A875RSQ8
LinkDB
Position
1:complement(147370..147957)
AA seq 195 aa
MNISTSAGVKRRRGGRSSQPEDEVNASELKLGPEFQLDQLDNHGNHTKLIALNLSEARIL
VRAALKERMEMIQGFNGTNETMDKDKLMADGEPDDETLARLATAPGANEVLRKTLEYLSM
FSRFKDAETCTAAETLLKSEENSGLHPFEVAQLGSLASEDIDEAVTLIPSLNEKKDEIDL
QRILDELNRLETNFP
NT seq 588 nt   +upstreamnt  +downstreamnt
atgaatatttctacatcggcaggcgtgaaaagaagaagaggaggacggtcaagtcagccg
gaagacgaagtgaatgcttcagaacttaaacttgggccggaattccaacttgatcagttg
gacaaccacggtaatcacactaaacttatagcgttgaatctctcagaggcaagaatttta
gttagagcagccttgaaagaaagaatggaaatgattcaagggtttaacgggacgaatgaa
acaatggataaggataaattgatggccgatggagagccagatgacgagactttggctaga
ttggccacagctccaggagccaacgaggtgctacggaagactttggagtatttatcaatg
ttttcgagatttaaggacgcagaaacttgtactgcggccgaaactttacttaaaagcgag
gagaattcgggtctacatccgttcgaagtggcccaactcggttctcttgccagtgaggac
atcgacgaagcagtgacgcttatcccaagtttgaatgagaagaaggatgaaatcgatctt
caacgaatcttggatgaattgaacagattagagacaaatttcccttga

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