Brettanomyces nanus: FOA43_000169
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Entry
FOA43_000169 CDS
T07002
Symbol
PRP43
Name
(RefSeq) DEAH-box ATP-dependent RNA helicase prp43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
bnn
Brettanomyces nanus
Pathway
bnn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOA43_000169 (PRP43)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bnn03041
]
FOA43_000169 (PRP43)
03009 Ribosome biogenesis [BR:
bnn03009
]
FOA43_000169 (PRP43)
Enzymes [BR:
bnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FOA43_000169 (PRP43)
Spliceosome [BR:
bnn03041
]
Complex A
U2 snRNP components
U2 related factors
FOA43_000169 (PRP43)
Complex B
FOA43_000169 (PRP43)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
FOA43_000169 (PRP43)
Ribosome biogenesis [BR:
bnn03009
]
Eukaryotic type
90S particles
Helicases
FOA43_000169 (PRP43)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
Flavi_DEAD
AAA_30
ABC_tran
nSTAND3
T2SSE
PhoH
Motif
Other DBs
NCBI-GeneID:
62193570
NCBI-ProteinID:
XP_038776432
LinkDB
All DBs
Position
1:complement(327859..330087)
Genome browser
AA seq
742 aa
AA seq
DB search
MTESLRPKKKSKTSTIDTENEDIEDGYGLDLDKRFQTTIKYAKKFEDGKINPFTGREFSD
KYVSILKTRRNLPVHQQRKEFLKMFQSSQIMVLVGETGSGKTTQIPQFVLYDDMPQLTGS
RVGITQPRRVAAMSVAARVADEMDVKLGEEVGYSIRFENMTSSKTVLKYMTDGMLLREAM
EDHDLCKYSCLILDEAHERTLATDILMGMLKQLCERRKDLKLIIMSATLDAEKFQSYFNS
APLLTVPGRTYPVELYYTPEFQRDYLDAAIRTVLQIHATEEAGDILLFLTGEEEIEDACN
KISLEADQLIREEGCGPLKVYPLYGSLPPYQQQKIFEKAPQAFKPNGRPGRKVIVSTNIA
ETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRL
YTEEAFKKELIQQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELN
YLDCLDDEGELTSLGRMASHFPLDPMLAVLLIISPKFHCSEEILTVVSMLSVPNVFVRPG
GAGARKAAEDAKMAFAHPDGDHLTLLNVYNAFNSDEARQTGGRKWCKENFLSFRSLKSGD
NVRRQLSRIMESYNLEMNSTAYEDPKYDDNIRKALTAGFFMQVAKRKSTGKGYITVKDSQ
DVLLHPSTVLSKQDEWVIYNEFVLTSKNYIRTVTSIRPEWLLECAPIYYNLDHFHEDDVK
MTLERVRDRMEKPDKKHNGKNF
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagtctttgagacctaaaaaaaagtccaaaacctcgactatagatactgagaat
gaagatatagaagatggatatggactagatctcgataagagattccaaacgacgataaag
tacgccaagaagtttgaagacggtaagataaatccgttcacgggcagagagttttctgat
aaatatgtaagcattttaaagacaagaaggaatctccctgttcaccagcagcgaaaggag
tttctaaagatgtttcagtcgagtcagatcatggttcttgttggtgagacaggttctggt
aagaccactcagattccacagtttgttctatacgatgatatgcctcagcttacaggaagt
cgagttggaattactcaacccagaagggtggctgccatgtctgttgctgcgagagttgcc
gatgaaatggacgttaaattgggtgaagaagttggttatagtattcgttttgaaaatatg
acttctagtaagactgtcttgaagtatatgactgacggtatgttacttcgtgaagccatg
gaagaccacgatctatgcaagtactcttgcctcatattggatgaggcccatgaaagaacg
ttggccacggatatattgatgggcatgttgaaacagctttgcgaaagaaggaaagatctc
aagttaatcatcatgtcggccactttggatgctgaaaagtttcagagctacttcaatagt
gccccgttattgacggttcctggacgtacgtatcctgtggagctatattatactccagaa
tttcagagagattatttggatgctgcaattagaaccgttttacaaattcatgcgactgaa
gaagccggagatattttacttttcctaacaggtgaagaagaaattgaagacgcttgtaac
aaaatcagtttggaggcagaccagctaattagagaggaaggatgtggtcctttaaaagtg
tatccattgtatggttcgttaccaccgtatcaacagcaaaagatttttgaaaaggcacct
caagctttcaagcctaatggaagacctggaaggaaggtgattgtttccaccaatattgca
gagacatctttgaccatcgatggtattgtgtacgtggttgaccctggtttcagcaagcaa
aaggtctataaccctagaatcagagtggaatcattacttgtttccccaatttccaaggct
tctgctcaacagagagccggtagagctggtcgtaccagacccggtaaatgctttagactc
tacactgaagaagccttcaagaaggaactgatacagcagagttacccagagattctcagg
tccaatctatcctctactgtgttggaattgaagaagttgggaattgatgaccttgttcat
tttgatttcatggaccctcctgctcccgagacaatgatgagagcattggaagagttgaat
tatctagactgcttagacgatgaaggcgaactaacgtctcttggtcgtatggcctcgcat
ttccccttggatcccatgttggctgtgcttctcattatatcacctaagtttcactgttcc
gaggaaattcttacagttgtctctatgctttctgttcctaatgtgtttgtgagacccgga
ggtgctggtgctagaaaggcagctgaagatgccaaaatggcttttgcgcaccctgatggt
gaccatttgaccctgttgaacgtttataatgcatttaattcggacgaggctaggcaaact
ggtggcagaaaatggtgcaaagagaactttctttcatttagatcgttgaagagtggcgat
aatgtcagaagacaactatctagaatcatggagtcctataatttggagatgaattccacg
gcatacgaagatccaaaatacgatgataacatcagaaaagcgcttactgccggctttttc
atgcaggtggctaagagaaagagcacaggtaagggctacattactgttaaagatagtcag
gatgttttgctgcatccatctacggtgttgagtaaacaagatgagtgggtaatctacaac
gagtttgtcttgacatcaaagaactacattcgtaccgttactagcattagacctgaatgg
ttgttggaatgtgctccaatctactataacttggaccacttccatgaggacgatgtcaag
atgactttggagagggtccgtgatagaatggaaaagccggacaagaagcacaatggaaag
aatttctaa
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