Brettanomyces nanus: FOA43_000261
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Entry
FOA43_000261 CDS
T07002
Name
(RefSeq) uncharacterized protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bnn
Brettanomyces nanus
Pathway
bnn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
FOA43_000261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bnn03021
]
FOA43_000261
03019 Messenger RNA biogenesis [BR:
bnn03019
]
FOA43_000261
Transcription machinery [BR:
bnn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
FOA43_000261
Messenger RNA biogenesis [BR:
bnn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
FOA43_000261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_C
CID
Pfc11_Clp1_ID
zf_PCFS4
VHS
NMD3
Motif
Other DBs
NCBI-GeneID:
62193662
NCBI-ProteinID:
XP_038776522
UniProt:
A0A875RSX4
LinkDB
All DBs
Position
1:535541..537220
Genome browser
AA seq
559 aa
AA seq
DB search
MNSRPIIESLTSLALENTEAATDIAKAVEKRINKAIPSQKLYAFYLLDSICKNVGVPYPS
LFGANIFKLFSQAYSLVDDPTRVKLIKLFRTWKIPNAVTGLSLFDEDQIELIDKFLIRAT
AANRPPEQQRQIDLSNSKATKSSLLREIDDLTNLVNSRILQMPDDSKGRERFQLLQKLRT
ILSQPSSIPQQQLDFTKKQLQSIREDELLRLNAFKQQQQPASKQMPQLSVNQLQGLLNLP
SGNNNNFPSYQAPFGKPQQQPPNQLNNANAQALFSMMSSILNQDQKRQQQQPQFQVNNGE
FNAKSSKSSSKDPSDNSNESSLGLTNLEFLKDILRKSKAGVKVPPMKGNAGIIRVNEKDP
VHVKKNETPEVILTRFELNQNFINNHEPTEEEIALIYTIKDNQCSNCSKRFFSTPEDAKK
KALHLDWHFRTNKKLKAMSKQIHNRSWFLSDQQWEQFQEDEIVGGNDNYDIGVGLNNRIN
EKPVLTEKEMNKKVVTIPDDAENEVICGICRDKLVGVFDDDSGEWIWRNAIKQRGRVYHY
SCWIETKGQGDRDRSPERR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaaggcctatcatcgaaagtctaacgtcactggccctagagaatacagaagct
gccacagatatcgccaaagccgtcgagaaacggatcaacaaggctattccctctcaaaaa
ctctacgctttttacttactggactccatatgcaagaatgtgggagtcccgtacccgtct
ttgtttggtgcaaatatattcaagctatttagccaggcttattcccttgtggacgatccc
acccgagtcaagttgatcaaacttttccgcacttggaagattccaaatgccgtcacagga
ctttccttatttgatgaggatcaaatagaactcattgacaaatttcttattcgtgctacc
gctgcaaatagaccccctgagcaacagaggcagatcgatttgtcgaatagtaaggctaca
aagagtagtttactgcgtgaaatcgacgacctcaccaatttggtcaattcaaggattctt
cagatgcctgatgattcaaagggaagagaaagattccagcttttacaaaaactacgcacc
attctcagccaaccatcgtctattcctcaacaacagcttgatttcaccaagaaacaactt
caatccattagggaagatgagttgttgaggcttaatgcatttaaacagcaacaacaacca
gcctcaaaacagatgccacagctctcagtgaaccagcttcaaggacttttgaatttacca
agcggcaacaacaataactttccttcatatcaggcgccatttggaaaaccacaacagcaa
cctccaaaccaacttaacaatgccaatgctcaggctttgttcagtatgatgagttcgatt
cttaaccaggaccagaaacggcagcagcagcagccgcaattccaagtcaataacggagaa
tttaatgctaagagtagtaagagcagtagcaaagacccctcggataacagtaacgagagc
tctctcggattaacgaacttggaatttttaaaagatattctccgaaagtccaaagcgggt
gtaaaagtgccacctatgaaaggaaatgcaggcattataagggtcaatgagaaagacccg
gtgcatgtcaagaagaatgagacaccagaggtgattctcacgagattcgaattgaaccag
aactttataaataatcatgagcctacggaagaagagattgcacttatctatacgattaag
gataaccagtgttctaactgctcgaaaaggttcttcagtacacctgaggatgccaaaaag
aaggctttacaccttgactggcactttagaacgaacaaaaagcttaaggccatgtcgaag
cagatccataataggtcatggtttttatctgaccagcaatgggaacaatttcaggaggat
gagattgttggaggtaacgataactatgatattggcgtgggattgaataatcgaatcaac
gagaaaccggtgcttacagaaaaagagatgaataagaaggtggttacaattccggatgat
gctgaaaatgaagtcatatgcggaatttgtagggacaaattggtgggagtgtttgacgac
gattctggtgaatggatatggagaaatgccatcaagcagagaggtagagtgtatcattac
agctgctggatcgagaccaaaggacagggcgatagagatcgttccccggagagaagatga
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