Brettanomyces nanus: FOA43_000561
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Entry
FOA43_000561 CDS
T07002
Symbol
MTR4
Name
(RefSeq) ATP-dependent RNA helicase mtr4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bnn
Brettanomyces nanus
Pathway
bnn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOA43_000561 (MTR4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bnn03019
]
FOA43_000561 (MTR4)
03041 Spliceosome [BR:
bnn03041
]
FOA43_000561 (MTR4)
03009 Ribosome biogenesis [BR:
bnn03009
]
FOA43_000561 (MTR4)
03016 Transfer RNA biogenesis [BR:
bnn03016
]
FOA43_000561 (MTR4)
Enzymes [BR:
bnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FOA43_000561 (MTR4)
Messenger RNA biogenesis [BR:
bnn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
FOA43_000561 (MTR4)
Spliceosome [BR:
bnn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
FOA43_000561 (MTR4)
Complex C
U4/U6.U5 tri-SnRNP related factors
FOA43_000561 (MTR4)
Ribosome biogenesis [BR:
bnn03009
]
Eukaryotic type
Pre-60S particles
Helicases
FOA43_000561 (MTR4)
Transfer RNA biogenesis [BR:
bnn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
FOA43_000561 (MTR4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
62193962
NCBI-ProteinID:
XP_038776818
UniProt:
A0A875RXH5
LinkDB
All DBs
Position
1:1220344..1223607
Genome browser
AA seq
1087 aa
AA seq
DB search
MDDLFGVFDENPQDLDSLEKEKLIKKDADSKPIEKDVKKRRNDQGDNKISSTKKARTYEK
QLIDKKAIKPNVTPIVADSLEIEASREFDASDGLLESSKKQELEKEGSKSDTGDVEKDGS
AGSTAKGPKMKLKHQVRHQVAVPPGYNYIPIGQHRREKEARTYPFKLDPFQDTSISCIDR
DESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIKALSNQKYRELHAEFGDVGLMT
GDVTINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKTRGVVWEETIILL
PDKVHYVFLSATIPNAMEFAQWICKIHNQPCHIVYTDFRPTPLQHYLFPSGGEGIYLVVD
EKGTFREENFQRAMASISNTQGDDPASIDSRKGGKTWKGGMHDGKSDIYKIVKMIWVKKY
NPVIVFSFSKRDCEALALKMSKMDFNTAEEKQMSTKIFTNAIGILSDEDKELPQIKNILP
LLKRGIGIHHSGLLPILKEVIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKWDG
TGFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKSMVKGQADRLDSAFHLG
YNMILNLLRVEGISPEFMMESSFYQFQKSSAVPQLEKQIQDTKDKLEKIHIDDYDNIKEY
YDLKKQLSQYRDDARKIITHPGNILPHLKSGRIIKVKIGDLDFGWAIVIDFHKRNPKRGH
TTSTFTDHESYLVNVFVNTMFIDSPLNLIKPFSPLLPEGIRPAKKGEESTITVIPITLDS
IQEISSCRSIMPKDINNRHSRDTLNRALKEIERRHPDGLPLLDPIAKMHIEDSGFMTLRK
KMEILESKVQSNPLAKSPKLKELYNDYSEKVTFEDTVKKLEAKNSEVQSIIQLDDLKHRK
RVLRRLGFISQNDVVEMKGRVACDISTGDELLLTELIFNGTFNELKPDQCASLLSCFVFE
ERSNEVPRLTPELAEPLKEMREMAGKIAKVSRESKIEIVEKDYVDSFRYELMEVVYSWCK
GATFTQICKMTDVYEGSLIRMFRRLEEMIKQLVDAAKTIGNVTLEQKMNQCLELVHRDIV
SAGSLYL
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttgttcggggtatttgacgagaatccacaggatttagattctttggagaaa
gaaaagttaattaagaaggatgctgatagtaaacccatcgagaaagacgttaagaagaga
agaaatgatcaaggcgataacaagatctcctctactaaaaaagcacgtacgtacgaaaag
caattgatcgataaaaaagctataaagccaaatgtaacgcctattgttgcagattcgtta
gaaatcgaagcttcgcgtgaatttgatgcatcggatggacttcttgaatctagtaagaag
caggaactagagaaagaaggttcgaaatcagatactggggacgtcgagaaggacggttct
gcggggtcaactgctaaaggacctaaaatgaaattaaagcatcaagtgagacatcaggtt
gccgttcctccaggatacaactacatacccattggccaacatagacgagagaaggaggct
agaacgtacccgttcaagcttgatccttttcaagatacttcaatctcttgtatagataga
gatgaatctgttttagtctcggcacatacttctgcaggtaagacggtggtggctgaatac
gccattgcacagtctcttagagataaacaacgagtgatctacacttcccctatcaaggct
cttagtaaccagaagtatagagaattgcatgccgaatttggcgatgtcggtttaatgact
ggtgatgtcactataaacccagatgcaggatgtttagtgatgactacagagattttaaga
tctatgctttatagaggctcagaagttatgagagaagtggcctgggttatattcgacgag
gtgcattatatgagagacaaaacacgtggcgttgtgtgggaagagacaataatactttta
ccggataaggttcactatgtgtttctttctgccaccataccaaatgctatggaatttgca
cagtggatttgcaagattcataatcaaccttgccatattgtctataccgattttagacct
acacccttgcaacattatctatttccttcagggggtgaaggaatatatcttgtggttgat
gagaaaggcacgttcagagaagagaattttcagagagctatggcctccatttccaacacg
caaggcgacgatcctgcttcaatagattccaggaaaggtggaaagacttggaaaggaggt
atgcatgatggtaaatccgacatttacaaaattgtgaagatgatctgggtgaagaagtat
aatccagtcattgtgttctcattctcgaaaagagactgtgaggctcttgcattgaagatg
tctaagatggattttaatactgctgaagaaaagcaaatgtccaccaagatctttactaat
gccatcggtattctttccgatgaggataaggaattgcctcagattaaaaatatcttacca
ctattgaaaaggggtatcggcattcatcattctggtttattgcctatattgaaagaggtt
attgagatcttgttccaagagggattattaaaagtgctatttgctacagagaccttctct
attggtttgaatatgccggccaagactgttgtctttacttccgtgaggaaatgggatggt
acagggttccgatgggtttctggcggtgaatacattcaaatgtccggaagggctggccgt
agaggtttggatgatcgcggtattgtcattatgatgatcgatgaaaagatggaaccacaa
gttgccaagtccatggtgaaaggccaggctgataggttagactctgccttccatttgggt
tacaatatgatcttgaacttgttgcgtgtcgaaggtatttctcccgagtttatgatggag
agttctttctaccagtttcagaagtcatctgctgtgccccagcttgagaagcagatccaa
gatactaaagacaagttagaaaaaattcatattgacgattacgacaacatcaaggaatat
tacgatcttaaaaagcagttgtcccaatatcgtgacgatgcaagaaaaatcatcactcat
cctggtaatatacttcctcatttaaagagtgggagaattatcaaggtcaaaattggggat
ctggactttggatgggcgattgtgattgatttccataagagaaatccgaaaagagggcat
accactagtacgtttaccgatcacgaatcatatctggtgaatgtgtttgttaacacgatg
tttatcgattctccgttgaacttgatcaagccgtttagtccgttgctacctgaaggtatc
agaccggctaaaaagggggaagagtctaccataacagtgataccaataactttggactct
attcaagaaattagcagttgtcgttcgataatgccgaaggatatcaacaatcggcattct
agagacacattaaatagggcacttaaggagatagagagaaggcatcctgatggacttcct
ttgcttgaccccatagccaagatgcatattgaggacagcggattcatgactcttcgaaag
aaaatggaaatattagagtctaaggtgcaatcgaatccattggcaaagtctccgaaactt
aaagaactatacaatgattattctgaaaaggttacctttgaagatactgttaagaaactc
gaagccaagaatagtgaggtgcagtcaataatccagcttgatgatttgaaacatcggaaa
agagtattgagaagattgggattcatctctcagaatgatgtggtcgaaatgaaaggtaga
gttgcatgtgatatcagtacaggtgacgagttgctacttacagaattgattttcaacggt
acatttaacgaactaaaaccggatcaatgtgcttcattactttcctgttttgtttttgaa
gaaaggtctaacgaggtgccaaggctcactccagaattggctgaacctcttaaagaaatg
agagagatggctggaaagatcgccaaagtgtcaagggaatccaagattgaaattgtggaa
aaggattacgttgattcattcagatacgaacttatggaggtggtgtattcctggtgtaag
ggcgctacattcactcagatttgcaagatgactgacgtttatgagggatcgttgattaga
atgttcaggcggttggaagaaatgatcaagcagttggtggatgctgccaagacgatcggt
aacgtgactcttgagcagaagatgaaccaatgtttagaattggttcatcgggacatcgtt
tccgccggatccttgtatttgtaa
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