KEGG   Brettanomyces nanus: FOA43_000872
Entry
FOA43_000872      CDS       T07002                                 
Name
(RefSeq) uncharacterized protein
  KO
K12830  splicing factor 3B subunit 3
Organism
bnn  Brettanomyces nanus
Pathway
bnn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bnn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FOA43_000872
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bnn03021]
    FOA43_000872
   03041 Spliceosome [BR:bnn03041]
    FOA43_000872
   03036 Chromosome and associated proteins [BR:bnn03036]
    FOA43_000872
Transcription machinery [BR:bnn03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     FOA43_000872
Spliceosome [BR:bnn03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    FOA43_000872
 Complex B
    FOA43_000872
 Complex C
   U2 SnRNP specific factors
    FOA43_000872
Chromosome and associated proteins [BR:bnn03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     FOA43_000872
    TFTC complex
     FOA43_000872
SSDB
Motif
Pfam: Beta-prop_RSE1_1st CPSF_A Beta-prop_RSE1_2nd DUF6650
Other DBs
NCBI-GeneID: 62194273
NCBI-ProteinID: XP_038777125
UniProt: A0A875RNF1
LinkDB
Position
1:1886837..1890286
AA seq 1149 aa
MTSVNPEFYLYNLTIQKPCSTVQSCIGNFTGVKKQQQIVKATSTSIELWSFNKHNGALKK
ICDQNCYSNIRQISTLRPLGFHKDLIIVTSDSGNLCLLSFNVELSRFETAVNQPYFKTGI
RPITPGEYIAVDGRNRAFIVGAIEKNKFVYTVSHDGDSSKPTVSSPLEANRSRVVTFALC
GLDVGFGDPLFAAIESEISAPNFKKTLTYYELDFGLNHVLKRYSEDLPESANFLLAVPGG
IDGPSGILVCSKDMITYKYLSKMTHSVPIPKRTDQLDCSTQIVSGVVHVLKHSFFILLQS
NLGDLFKVTINGVAQDSDESDGQPGLVDAIEIKYFDSMPVCNSLLIFKSGFLYANCEYGD
QYIYQFEKLGDDPDDKSWISTDYPDDVAVLTAEPDQISFEVKQFDNLNLVNILENFNPII
DSKLYDSGDVFDLPVIYSLCGSGPRSSLNVLNHQLPFTEIVTQELPSVVTCIFSIVTHKE
DKYDKFIVISFYDQTLILSVGEEVEEAEDSGFLTDVATQNVAQVGSTSVVQIHSNGLRQI
FYDKDDKPVKNVSWSPPVGIEILHSAITNTQVALALSSRELVYFETDAQDRLIEYSEHKE
LESQITSLCLGNLSPGQARFPFIVAGGKDQTLTVLKTDPSSTLEIIVKEDLSSVPCSLMV
LRVRDSGVFEEEEDDDDAEDNVALSTLYLHIGMTNGVYARLKFDQVSGELSNPRNQYTGP
KEVHLSRLKFDHQNVVGITSVRSYLGYASAADFKITALAKPIFTELCAFKSEDVPVNGAL
GIHGGNLTIMTVDQLDSSLLIESIALRYTPKAMADSTDFNGMLYVAEADFQIKSPYTKGD
DNGEEIISYEFDEDLQEHYQQFGYGLEAGHWASCIQVVSIEKKAVGQAVELKNEAAFKLC
RVSFASDMKNDFLVISTAVNQAFAPNRNDGTFLRVYKICEDGSLLFHYKTKTESLALALI
SFQGKLLVGMRDLLVLYDLGKKQLLKKCSTKLEECREIVDLKTQGLRVVVSDIGDSVRYV
SYQPKENEFVTFIDDYMKRHVTRTLMLDYETVIVGDKFGELSVLRCPEEISEMNESDTRG
AIAAQKDSRLNGAPFRLKNVMNFYIGDVPTSFQKGSLTIGGSECILYTGLQGTIGCLHPL
KTLSEINFF
NT seq 3450 nt   +upstreamnt  +downstreamnt
atgacttccgtcaacccggaattctacctgtacaacctcacaatccagaagccttgttcc
acggtacagtcctgtataggaaattttacgggtgtgaaaaaacagcagcagatagtcaaa
gccactagtacaagcatagaattatggagtttcaacaaacacaacggagctctcaagaag
atctgtgatcagaactgttatagcaacattagacagatttccacactacgaccccttgga
tttcacaaggatctcattattgttacttcggatagtggaaatttgtgtctcttaagcttc
aatgttgaactctctcggtttgagactgcagtgaatcaaccctacttcaaaactggcatc
cgtccaattacgcctggagagtacatagcggttgatggtcgtaatagagcgtttattgtg
ggtgcgatagaaaaaaataagttcgtctatacggttagccacgatggtgattcgagcaaa
cctacggtatcctcgcctctagaggccaacagaagtcgagttgtaacctttgctttatgt
ggtcttgatgttggatttggagatccgttatttgctgctatagagagcgaaatatctgct
cccaatttcaagaagacacttacctactacgaacttgattttggtctcaatcatgtcctc
aagaggtacagtgaggatttgccggaatccgccaattttcttctggctgttccaggtggt
attgacggaccttccggtattttggtgtgctcaaaagatatgataacctataaatatctc
tcaaagatgacacattcggttcctattcctaagaggactgatcagctagattgttctacc
cagatagtctctggagtagttcacgtactaaagcattcattttttatcttacttcaaagc
aaccttggtgatctattcaaagttaccatcaatggggtagctcaggattctgatgaatcc
gatggacagccgggacttgttgatgcgattgaaatcaagtacttcgactcaatgcccgtc
tgtaactctttactaatcttcaaatcggggtttctctatgctaattgtgagtatggtgat
caatacatatatcaatttgagaaattgggtgacgacccagatgacaagtcttggatatct
acggattatcccgatgatgttgccgtactaactgcagaacctgatcaaatatctttcgag
gtaaagcagttcgataacttaaacttggttaacatcctggaaaatttcaaccctatcatc
gattctaagttatacgattctggtgatgtttttgatcttcccgttatctattccctatgt
ggctcgggtcccagatcgtccctgaatgtactgaatcatcagcttcctttcaccgagatt
gttacacaagaattgcccagcgtggtgacttgtatattttccatagttacccacaaggag
gacaagtatgacaagtttatagtcatttcattttatgatcagactttgattctcagtgtt
ggtgaagaagtggaggaggcagaagattcaggttttctcactgatgttgcgacacagaat
gttgctcaggttggttctacatctgtggttcaaattcattccaatggtttgaggcaaata
ttttatgacaaagatgataagcctgtaaaaaatgtctcctggagcccgcctgttggcatc
gaaattcttcactcggctatcacaaatacccaggttgctctagctttatcgagcagagag
ttggtgtactttgagacagatgctcaagatagattgattgaatatagtgagcacaaagag
ttggagtcacagatcacctctctatgccttggaaatctttcacccgggcaggctcgtttt
ccgttcattgttgccggtggaaaggatcaaactttaactgtattaaaaacggatccctct
tccacattagagattattgtcaaggaggatctcagctctgtcccatgttcattaatggtg
ctccgtgtgagagattctggtgtattcgaagaggaggaagacgatgatgatgctgaggat
aacgtggccctttccacactttacttgcatattggtatgactaacggtgtttatgcccgt
ttgaaatttgaccaagtgtcaggagagctctcgaatcctagaaatcaatatacggggcca
aaggaagttcatctttcccggttaaagtttgatcatcagaatgttgtgggaatcacttcc
gtgagatcgtatttgggatacgctagtgctgcagattttaaaataactgctttggccaaa
cctattttcactgagctttgtgcatttaaaagtgaggatgtaccagtaaacggtgcattg
ggtattcatggtggtaatttgaccattatgactgttgatcagcttgattccagtttgctt
attgaaagtattgctctaaggtacactcctaaggcaatggctgatagtaccgactttaat
ggaatgctatatgttgctgaggctgatttccagatcaaatcaccttatacaaagggtgac
gacaacggtgaagaaatcattagctacgaatttgatgaagatttgcaagagcattaccaa
cagtttgggtacgggttagaggccggccattgggcttcttgtattcaagttgtttctata
gaaaagaaggcagttggtcaagccgttgagttgaaaaatgaagcggctttcaagctttgc
cgagtttcgtttgcttcagatatgaagaacgattttttggtaatatctaccgctgtgaac
caagcatttgcacccaataggaatgatggaacgtttcttagagtgtataaaatatgcgaa
gatggatctttactgtttcattacaaaaccaagacggaatcgttagcattagcacttatt
tcgtttcagggaaagttgcttgtgggaatgagagacctgttggtattatacgatttagga
aagaagcagttacttaagaaatgtagcacgaagttagaagaatgtcgagagatcgtggat
ttaaagacgcagggacttcgtgtagttgtcagtgatattggtgacagcgttcgatatgtc
agctaccagccaaaggaaaatgagtttgtcactttcattgatgattacatgaaacgacat
gtgactcggacattgatgctagactacgagacggtgattgtgggggacaaatttggagag
ctttctgttctcagatgtcctgaagaaataagtgaaatgaatgaaagcgacactcgagga
gccattgcagcacagaaagattccagattgaatggagcaccattcagattgaagaatgtg
atgaatttttacattggagatgttcctaccagcttccagaagggatccctcaccatagga
ggaagcgaatgtatattatacacgggacttcagggcaccatcggatgccttcatccacta
aagactttgagcgaaatcaactttttttaa

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