Brettanomyces nanus: FOA43_002479
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Entry
FOA43_002479 CDS
T07002
Name
(RefSeq) uncharacterized protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
bnn
Brettanomyces nanus
Pathway
bnn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOA43_002479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bnn03041
]
FOA43_002479
Spliceosome [BR:
bnn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
FOA43_002479
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_HPS5
Beta-prop_TEP1_C
PRP4
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_SPT8
WD40_RFWD3
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_WDR75_2nd
WD40_like
WD_LRWD1
Beta-prop_NUP159_NUP214
KNTC1_N
WDR54
Beta-prop_Nup120_160
SHMT
Motif
Other DBs
NCBI-GeneID:
62195880
NCBI-ProteinID:
XP_038778700
UniProt:
A0A875S437
LinkDB
All DBs
Position
2:1028228..1029517
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AA seq
429 aa
AA seq
DB search
MEKLTDVNKLVPTIDEEVKSILHQLEQPITRFGEGPGERRERLIELVSSDEKARNAMIKL
QESSSDDLMSDLDNEEFYTPGTDDVFQIRSSIADDSLRRAQRRVLGQHQLYTTTDPLENL
KSRRAYYKGLKSCLQLEGSQIVSNRFTSAVQFSPDDSLIAAASWNGSCYIYDSKTLDLKH
TFKDLLSEKVSALDWMPDSTAKRLATGGAAGKIKLVDLENRSDGELDGHQGRITDVQFHP
ICKYLCSSSYDLTWRLWDLEKMQEIYYQEGHSKELTVLKIHPDGSLLASAGLDAMVRVWD
LRTGRSIAVLSNNGHIKAVHAMDWRPSGFQLITGGADNNLKVWDLRKSNSSAAETVLAHS
KMITDVKVASNDKYFVSCGYDGYLDVISCDNFVTIKKFKNIDKLMTCDVSHDSKRIITGG
WDRSLKLYQ
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaactcacggacgtcaacaaattagtaccgacgatcgatgaagaagtcaagtcg
attctccatcaactcgaacaaccgataaccagattcggcgaaggccctggtgagagacgt
gaaaggcttattgagttagtgagtagtgatgagaaggccagaaatgcgatgataaagttg
caagagtcatcttctgatgaccttatgtcggatctggataatgaggagttttatactcca
ggtacagacgatgttttccaaataaggtcttctatagctgatgactctcttcggagagcc
cagagaagagttttggggcagcatcaactatacacgactacggatccgctagaaaacttg
aagtctcgaagagcctattataaaggactcaagagctgtttacagcttgaagggtcacag
attgtatctaaccgattcacttcggctgtccagttttctcctgatgactccttgattgct
gctgcttcttggaatggcagctgttatatatatgattctaagactcttgatttaaagcat
actttcaaggatttactctcggaaaaggtgtctgcattagactggatgcctgatagtaca
gccaaacgattggctaccggaggtgcagccggtaaaatcaagttggttgacttagaaaac
cgatcagatggagaacttgatggtcatcagggtagaattactgatgtacagtttcatccc
atttgcaagtatctttgcagcagttcttatgatctgacatggagattatgggaccttgaa
aagatgcaggagatctattatcaagagggtcattcaaaggagttgaccgttttaaaaatt
catccagatggctctttattagccagtgcgggtcttgatgctatggtaagagtctgggat
ttgagaacgggtcgttctattgccgtgttaagtaataacggtcacattaaagctgttcat
gctatggattggcgacctagtggtttccagttgatcactggtggtgctgataacaacttg
aaggtttgggatcttaggaagagcaattcttctgctgcagaaaccgtcttggcacactca
aagatgatcacagatgttaaagtggcttccaacgataagtattttgtctcgtgtggctat
gacggttacttggacgtaatatcctgtgataattttgtcaccattaagaagtttaagaac
atcgataagttgatgacctgtgatgtaagtcatgatagtaagaggattattactggagga
tgggatagatccttgaaactgtatcaataa
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