Brettanomyces nanus: FOA43_002894
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Entry
FOA43_002894 CDS
T07002
Symbol
RPB1
Name
(RefSeq) DNA-directed RNA polymerase II subunit rpb1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bnn
Brettanomyces nanus
Pathway
bnn03020
RNA polymerase
bnn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FOA43_002894 (RPB1)
09124 Replication and repair
03420 Nucleotide excision repair
FOA43_002894 (RPB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bnn03021
]
FOA43_002894 (RPB1)
03400 DNA repair and recombination proteins [BR:
bnn03400
]
FOA43_002894 (RPB1)
Enzymes [BR:
bnn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FOA43_002894 (RPB1)
Transcription machinery [BR:
bnn03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
FOA43_002894 (RPB1)
DNA repair and recombination proteins [BR:
bnn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
FOA43_002894 (RPB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Salivary_glue
Motif
Other DBs
NCBI-GeneID:
62196295
NCBI-ProteinID:
XP_038779104
UniProt:
A0A875S746
LinkDB
All DBs
Position
3:join(536777..536780,536850..542110)
Genome browser
AA seq
1754 aa
AA seq
DB search
MKEIRAISVAKIEYPEIMDPVTMKPRIGGLNDPRLGSIDRNFKCQTCGEDMKECPGHFGH
IELAKPVFHIGFMPKIKKLCECVCMNCGKLLLDEHTNPHFAAAIKIRDPKKRFQAVWTLC
KTKMVCEVDPPADDDDDDDNDINGTGGPKFRRGGCGSMQPSIRKDGMKLWGTWKRTNLED
ETEQIERRQVHAEEVLSVFKHISTDDCVKLGFNEEWARPEWMIMTVLPVPPPPVRPSVAF
TDSKRSEDDLTYKLADILKANINVQKFEIDGSPQHVINEFEALLQYHVATYMDNDIAGQP
QALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARSVISGDPNIELDQVGVPMTVAK
TLTYPEIVTPYNIQKLTQLVRNGPNQHPGARYVIRDSGERIDLRFNKRAGDIQLQYGWKV
ERHLMDGDPVLFNRQPSLHKMSMMCHKVRVMPFSTFRINLSVTTPYNADFDGDEMNLHVP
QSYETKAELQEIAAVPKQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMCFW
IPNWDGVVPQPAILKPKPLWTGKQIFSLTIPKGIFMQRLDGSLLSPKDSGMLIVNGSVIF
GVVNKATVGTSSGGLIHTCMREKGPDVCAQMIGNIQKVVNFWLLHNGFSIGIGDAIADPD
TMKTITKTISVAKDQVQEVISDAQKNVLEPEPGMTVRESFEQKVSKILNEARDAAGKSAE
TSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPHFTKDDYSA
ESKGFVENSYLRGLTPQELFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDIMVQYDG
TTRNSLGDVIQFIYGEDGLDGTQVEKQVVDTIQGSTDSFEKKYRIDLMDKSKSLRADLVE
YGADIVGDMGLQKLLDEEYKQLLSDREFLRTKVFPTGENNWPLPVNIRRVIQNAQQIFHV
DRYKANDLTIPEIINGVKDLCKKFIVVRGKGGCLDEAQDNATYLFQCLVRSRMATKRILQ
EFRLNKDAFEWVLGMIEQQFAKALVNPGEMVGVLAAQSIGEPATQMTLNTFHYAGVSSKN
VTLGVPRLKEILNVAKNIKTPALTVYLQDAVAFDIERAKSIQSAIEHTTLKNVTAVTEIF
YDPDPKSTVIEEDVDTVEAYFAIPDEKVEENLHKQSPWLLRLELDRAKMLDKQLTMSQVA
GKIMENFGDDLFVIWSEDNAEKLVIRCRIVREEKALDEEEEETEDGLLRALETQMLESIT
LRGITGISRVFMMKYDKTYVDEAGDFAKKKEWVLETDGINLSEVIAVDGVDPTRTYSNSF
VEVLSVFGIEAARTALYKEILNVIAFDGSYVNYRHLALLVDLMTYKGHLIAISRHGFNRN
ETGALMRCTFEETVEILFEAGASAELDTCDGVSQNVIMGQMAPFGTGAFEMYLDEDRLGL
LPSEERSTAVAAPSSTPVAASTKNVAGSATPYEDEQLKDDFVHVEDSDKVAFSPMITSTA
NDDRSGGFTEYGGVSSYQPSSPRFGATSPSYGATSPGYAPTSPGYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSP
TSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPS
YSSAADHKEDEEKK
NT seq
5265 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaatccgtgccatttctgttgccaagatcgaatatcccgagattatggatcct
gtgacgatgaagcctagaataggtggtttaaatgaccccagactgggttctatcgacagg
aatttcaagtgtcaaacgtgtggtgaagatatgaaggaatgtcctggtcatttcggacac
attgaattggccaagcccgttttccacattggtttcatgcctaaaatcaagaaattatgt
gaatgtgtctgtatgaattgtggcaaactgttgttggatgagcatactaacccccatttt
gctgctgcaattaaaattagagaccctaaaaagcggtttcaggccgtctggactctttgt
aagacaaagatggtctgtgaagtcgacccccctgctgatgatgatgacgatgacgataat
gacataaatggaactggcgggccaaagtttcgcagaggtggttgtggcagtatgcagcct
tcgattcgtaaggatggtatgaaactttggggtacatggaaaagaaccaacctggaagat
gaaactgaacaaattgaaagaaggcaagttcatgctgaagaagttttgagcgtgtttaag
cacatttctactgacgactgcgtgaaattaggtttcaacgaagagtgggctcgtcctgaa
tggatgatcatgactgtattaccagttcctcctcctccagtgagaccttccgtcgctttt
accgattctaaacgttccgaagatgatttgacttataaattggccgatattttgaaggcc
aatatcaatgttcaaaagtttgaaatagatggttctccacaacatgtcatcaacgaattt
gaagctttacttcagtaccatgttgccacatatatggataacgatatcgctggtcaacca
caggctttgcagaaaagtggtaggcctatcaagtccatcagggcccgtttaaaaggtaag
gaaggtcgtcttagaggtaacttgatgggtaaaagagtggacttttctgcccgttctgtc
atttccggcgatccgaacatcgagctagaccaggtcggtgtccctatgactgttgctaag
actcttacttatccagaaattgtcactccatacaacattcaaaaattaacccaacttgtg
aggaatggtcctaatcaacatcccggtgcccgttatgtaattcgtgattctggtgagcgt
atcgatttacgttttaacaagcgtgcaggtgatattcagcttcagtatggctggaaagtt
gagcgtcatttgatggatggtgatcccgttttattcaatcgtcagccatctcttcataaa
atgtccatgatgtgtcataaagtgcgtgtcatgccgttctcaacgttccgtatcaacttg
tctgtgacaacgccctacaacgccgatttcgatggtgatgagatgaacttgcacgttcct
cagtcctatgagaccaaggctgaattacaggagattgcggccgtgcccaagcagattgtg
tctcctcaatccaataagcctgtgatgggtattgtccaggatacgctttgtggtgttaga
aagatgaccttacgtgataacttcattgagtatgaccaggtaatgaacatgtgtttctgg
attccaaattgggatggtgtagttcctcaacctgccattttgaagcctaagcctctttgg
actggcaagcagatattttctcttactattccgaagggtattttcatgcagagacttgat
ggctcgttgctatcccctaaagattctggtatgttgatagttaatggtagtgttatcttt
ggtgtagtcaacaaagctacggttggtacctcttctggtggtttaatacatacttgtatg
cgtgaaaagggtccggatgtctgtgcacagatgattggtaacatccagaaggtggtgaac
ttctggttgcttcataacggtttctccattggtattggtgatgccattgctgatcctgac
actatgaagaccattaccaagactattagtgtggccaaagatcaagttcaggaggttatt
agtgatgctcaaaagaacgtcttggagccggagcctggtatgacggttcgtgagtctttc
gagcaaaaagtgtctaaaatcttgaacgaggctcgtgatgctgccggtaaatcagctgaa
acttccttgaaggattctaataatgtgaagcagatggtgacggcaggttccaagggttct
tatatcaacatctctcagatgtctgcttgtgttggccagcagattgtcgaaggtaagcgt
atcaacttcggttttgctgaccgttcgctacctcattttactaaggatgattactctgct
gagtctaaaggttttgtagagaattcttacttaagaggtttaactcctcaagaattattc
ttccatgctatggctggtcgtgaaggtttaattgatactgctgtgaaaactgcagagact
ggttatattcagcgtcgtttattgaaggcattagaggatattatggttcagtatgatggt
actacaagaaattctttaggtgatgttattcagttcatctatggcgaggatggtcttgat
ggtacgcaggtcgaaaagcaggtggttgataccattcaaggttcgacggattctttcgag
aagaagtaccgtatcgatttgatggataagagcaagagtcttcgtgccgacttggttgag
tatggtgctgatattgtaggtgacatgggtttacagaaacttttggatgaggaatataag
caattactctccgatcgtgagttccttcgtactaaagtgttcccgacaggtgaaaataac
tggcctttgcctgttaacattcgacgtgtgatccagaatgctcagcagatattccacgtg
gaccgttataaagctaatgacttgacgatcccagagattattaacggcgtgaaagatctg
tgtaaaaagtttattgttgttcgtggtaaaggtggatgtctagacgaggctcaggataat
gctacctacctcttccagtgtctggttagatcacgtatggccaccaagcgtattcttcaa
gagttccgcctaaataaggatgcattcgaatgggttcttggtatgattgagcagcagttt
gccaaggctttggttaatccgggtgaaatggttggtgtccttgctgcccaatctattggt
gagcctgcaacgcagatgacgttgaacactttccattatgctggtgtttcttccaagaat
gttaccttgggtgttcctcgtttgaaggagattttgaatgttgctaagaatatcaaaact
cctgccttgactgtgtacttgcaggacgctgtcgcttttgatattgagcgtgccaagtct
attcagtcagctattgagcataccactttgaagaacgtcacggctgttacagaaatcttc
tatgatcctgatccaaagagtaccgtcatcgaagaagatgtcgatactgtcgaggcctac
tttgccattccagatgaaaaggtggaggagaacttgcataagcagtctccttggttgtta
cgtttggaattggatcgtgccaaaatgcttgataagcaacttactatgagtcaggttgcc
ggtaaaatcatggagaacttcggtgacgacttatttgttatctggtctgaggataatgcc
gagaaattggtgatcagatgtagaattgttcgtgaagaaaaggcattggatgaggaggaa
gaggaaactgaggacggtttgttgagagccttggaaacacaaatgttagagtcgatcact
ttaagaggtattaccggtatcagtagagtgttcatgatgaaatatgataagacttacgta
gatgaagcaggagactttgccaagaagaaagagtgggttttggaaactgatggtattaac
ttatcagaagttatcgctgtcgatggcgttgatcctacgaggacatactccaattcgttt
gttgaggtcttatctgtgtttggtattgaggcagctagaacagctttgtacaaggagatt
ctgaatgttattgcctttgatggttcgtacgtcaattacaggcatttagcattattggtg
gacctaatgacctacaagggtcatttgatcgccatttctcgtcatggttttaacagaaat
gaaaccggtgcattgatgagatgtactttcgaggaaaccgtagaaattttgtttgaggca
ggtgcctctgcagagttggatacctgtgatggtgtctctcaaaatgtcattatgggacag
atggctccattcggtactggtgcattcgagatgtatctcgacgaggacaggttgggtctg
cttccttcggaggagcggagcactgccgttgccgcaccaagttctactccagtggctgct
tctacgaagaatgttgccggctctgctactccttacgaagatgagcaactcaaggacgat
ttcgttcatgtggaagacagtgacaaggttgctttctctcctatgatcacttcgactgct
aatgacgacagaagtggtggattcactgagtatggtggtgtcagtagttaccaaccaagt
tctccaaggttcggtgctacttctccaagctatggagcaacgtctcctggttatgcgcct
acatccccaggctattcgccgacttcaccaagttacagtcctacttcaccttcgtattcg
ccaacttcgccaagttatagccctacttccccttcatattcaccaacatccccatcttac
agtcctacatctccatcttattctccaacatctccatcctacagcccaacatcgccaagc
tacagtcctacatctccatcttactcaccgacttcaccaagttacagtcctacatctcca
tcgtactcaccaacttcaccaagctacagtcctacatctccatcgtactcgccaacttca
ccaagttacagtcctacttctccatcttactcaccaacgtcaccatcttactctccgact
tcaccttcctactctccgacttcaccttcctactccccaacctctccccagtattcgcca
acatctccatcgtactcccctacatccccacagtactctcctacatccccacagtactcg
cctacatctccacagtactcaccaacgtcaccacaatactcacctacgtcccctcaatac
tcgccaacttctcctcaatattcaccaacttctccgcaatacagtccaacatccccatca
tattcttcagcagcggatcataaagaggacgaggagaagaaatga
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integrated database retrieval system
