KEGG   Brettanomyces nanus: FOA43_002948
Entry
FOA43_002948      CDS       T07002                                 
Symbol
RPB5
Name
(RefSeq) DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase II subunit 5)
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
bnn  Brettanomyces nanus
Pathway
bnn03020  RNA polymerase
bnn03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bnn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FOA43_002948 (RPB5)
  09124 Replication and repair
   03420 Nucleotide excision repair
    FOA43_002948 (RPB5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bnn03021]
    FOA43_002948 (RPB5)
   03400 DNA repair and recombination proteins [BR:bnn03400]
    FOA43_002948 (RPB5)
Transcription machinery [BR:bnn03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     FOA43_002948 (RPB5)
  RNA polymerase III system
   RNA polymerase III
     FOA43_002948 (RPB5)
  RNA polymerase I system
   RNA polymerase I
     FOA43_002948 (RPB5)
DNA repair and recombination proteins [BR:bnn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      FOA43_002948 (RPB5)
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Mrr_cat
Other DBs
NCBI-GeneID: 62196349
NCBI-ProteinID: XP_038779156
UniProt: A0A875S1H8
LinkDB
Position
3:join(639391..639395,639478..640135)
AA seq 220 aa
MRGYTKMEDVDRATSRLWRAYKTVKEMVSDRGYYIPQEEIEIPLDQFREKFCDSMGMPQR
KLMSFQATPRQEALEKYGDLGPLWVEFCDEPSVGIQTMKNFCAHIADKNFSTGVFIYQQN
LTPSATKAIAVAEPATIEIFQESDIIVNITHHELVPKHIRLSNEEKKDLLKRYKLKESQL
PRIQSQDPVAMYLGLKRGQVVKIVRRSETAGRYASYRICL
NT seq 663 nt   +upstreamnt  +downstreamnt
atgcgagggtatacaaagatggaagacgttgatagagcaacatcaagactatggagagca
tataaaacggttaaagagatggtgagtgaccgaggatattatattccacaagaagagatc
gaaatacctctcgatcaattcagagagaagttctgcgattcgatggggatgccacaacgg
aagttgatgtcatttcaagccacgcctagacaagaagcactagagaaatatggcgatttg
ggaccactttgggttgaattctgtgacgagccttcagttggtattcaaactatgaagaac
ttttgcgctcatatagctgataagaacttctctactggagtcttcatctaccagcagaat
ctaacaccttccgcaaccaaagcaattgccgttgcagagccggcgacaattgaaatcttc
caggaatcggacatcatagtgaacattacgcatcacgagttagttccaaagcacattaga
ttgagtaatgaggagaaaaaggacctattaaagagatataaattaaaggagtcacagctt
ccacgaatccagagccaggacccggtggcaatgtaccttggattaaagaggggccaggtg
gtgaagattgtgagacgaagtgagactgccggtagatatgcatcatataggatatgcttg
tag

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