KEGG   Brettanomyces nanus: FOA43_003113
Entry
FOA43_003113      CDS       T07002                                 
Name
(RefSeq) uncharacterized protein
  KO
K14962  COMPASS component SWD2
Organism
bnn  Brettanomyces nanus
Pathway
bnn03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:bnn00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    FOA43_003113
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bnn03019]
    FOA43_003113
   03036 Chromosome and associated proteins [BR:bnn03036]
    FOA43_003113
Messenger RNA biogenesis [BR:bnn03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     FOA43_003113
Chromosome and associated proteins [BR:bnn03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     FOA43_003113
    COMPASS/SET1 complex (yeast)
     FOA43_003113
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Staphostatin_B Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_NOL10_N Agglutinin
Other DBs
NCBI-GeneID: 62196514
NCBI-ProteinID: XP_038779318
UniProt: A0A875S4C3
LinkDB
Position
3:complement(925436..926419)
AA seq 327 aa
MLPLHISKVFKNHTPDTPITSISYDTSGQYLLTSGTDESLQLYEIPKGRHLKSIYSKKYG
CHLAIFTNTSHSQCLFASTQENHVIRLLNLDDNSFIRYFKGHKQQVVNLINATSATRLES
FYSSSIDGTVKCWDMRTNTCTASLGLSSTPLIALDPTNSVMAILETGSFQLRLVAMGKFP
TGSIKVVDLSSLFKQSLPKNLQFTNDNKYIIITTDSTEHIVLDSFSLQIMGTLSGQVPFI
SRKYPDSGNITVTPSGKYVIGGSGNGELLVWDLSYLSNNTSMKQLAPTSKLTNSAEGTLS
IPRMVLFNPHYEMLATADTEVSFWTSK
NT seq 984 nt   +upstreamnt  +downstreamnt
atgcttcctctccacatatctaaggtgtttaaaaaccacacaccagatactccaatcaca
tccatctcttatgatacatctggacaatacctcctcacttctggtactgacgaatctctt
caactctatgagattcctaaaggaagacatctgaagtctatatactccaagaaatatggc
tgtcatctggccatctttaccaacacttctcattctcaatgtctttttgcaagtactcaa
gaaaatcacgtcattagattactcaatctagacgataactcttttattcgctattttaaa
ggacataagcagcaagtcgtcaatctaatcaatgctacaagtgcaactagactcgaaagt
ttctattccagttcaattgatggtactgttaaatgttgggatatgagaaccaacacatgc
actgcttctttgggtctttcttctacccccctcatagctcttgatcctactaacagtgtc
atggccatactagagaccggctctttccaactgaggctcgtggcaatggggaaattccct
acaggatccatcaaagtcgtcgatttatcttcactgtttaaacaatctcttcctaaaaat
ctccagttcactaatgataacaaatacatcattataactacggattctacagagcatatt
gttcttgattcattttcccttcagataatgggtactctttccggccaggtacctttcatc
tccagaaaataccctgacagtggtaatattacggtaactccaagtgggaagtacgttata
ggaggctctggaaatggcgaattgctagtctgggacttgtcatatctctccaataataca
tcgatgaaacagttagctcctacaagtaagctgacaaactcagctgaaggcactctgtcg
attccgagaatggttctcttcaacccacactacgaaatgttggctaccgcagatacagag
gtctctttctggacgtccaaatag

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