Brettanomyces nanus: FOA43_003180
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Entry
FOA43_003180 CDS
T07002
Name
(RefSeq) uncharacterized protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
bnn
Brettanomyces nanus
Pathway
bnn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOA43_003180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bnn03041
]
FOA43_003180
Enzymes [BR:
bnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FOA43_003180
Spliceosome [BR:
bnn03041
]
Complex C
Other components
Step II factors
FOA43_003180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
Helicase_C
OB_NTP_bind
DEAD
HA2_N
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
ResIII
ABC_tran
ATPase
T2SSE
PhoH
AAA_30
AAA_16
Motif
Other DBs
NCBI-GeneID:
62196581
NCBI-ProteinID:
XP_038779383
UniProt:
A0A875S4E1
LinkDB
All DBs
Position
3:join(1065840..1065846,1065886..1068662)
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AA seq
927 aa
AA seq
DB search
MSIQLSFDEDDEDSASRSALWASKSRDKVSFKRIKKEDAIKLKTEAIDVRIGDQKSKEDQ
LGGDDEAREPKVMASVTKFEMPPVSYEHKSILEELAQRERQWKDEAAGAQSPSSSLSDRE
VDRDWYMQDERVNHVYMDDYDMDDEDRVSKIDEDDLEEVSNDIDIHVHRLTPPFLDSHTV
MSNHTGMIDVIRDRTGDLFKFSKNGSSVVNERRKNRDRQRNARESVRSDNSALEKVVRKG
SNGTRHDGRGTRTNPPPRYSRADIQRQRQALPAYKVREQFLKVVRENQVVVVIGETGSGK
TTQLPQFLYGEGYKERGLIGITQPRRVAAVSVAQRVSEEMNVKLGEEVGFSIRFEDRSSS
KTRIKFMTDGILLRETLQDEDLDKYSCIIMDEAHERSLNTDILIGLFKKLLARRRDLKLI
VTSATLNADKFSSFFGNAEQFIIPGRTYPVDIMFSSVPVMDYVEEAVKQVLRVHLSAENK
GDILVFMTGQEDIEVTCSQIEEELDNLRKLDETIKPLQVLPIYSTLPADLQARIFERSEY
RKCIVATNIAETSLTVDGIGFVIDTGLMKLKVYNARLSMESLQITPISLAQANQRAGRAG
RTGPGTCYRLYTLTAAQTEMLPEPIPEIQRTNLENTILLLKSLKVKDLSRFPFLDRPSIE
SISTAQYQLWSEGALDNFGDLTLLGERMSRFPIEPTLSKFLILSTLDRFHCSKEVVTIVA
MLSIPPIFVRPNNDMGLQKKSDSSREKFQVAESDHLTLLNIYDQFMSHGRNEKWCQHNFL
QHKSLRRASEIREQLVQIMKNNKLDLTVQDCEDWNLIRECVCAAFFLNGASFKKYGQYQH
LRSGLEMALHPTSALYGMGDLPKYVVYHEVILSGRVQHMNYVSTVKGEWLIEYGGVFYSK
RVRGVSSKEHQRRKETEYEEYLQASKK
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgtctatccagttatcgtttgatgaagatgatgaagattcagcctctcgttcggccctt
tgggcttcaaagtcccgcgataaagtgtcctttaaaaggataaagaaggaggatgccatc
aagttgaaaaccgaggcaatagatgtgcgaattggtgaccagaagtcgaaggaggaccag
ttagggggagacgacgaagcaagggagccaaaagtgatggcctctgttaccaagtttgag
atgcctccagtttcttatgagcataagagcattcttgaagaactggctcaaagagaaaga
caatggaaagatgaagccgcaggagctcagagcccttcatcctctttgagcgacagagag
gtcgatcgtgattggtatatgcaagacgaacgagtgaatcacgtctatatggacgattat
gatatggatgatgaagatagagtaagcaagattgacgaggatgatcttgaggaggttagt
aatgatattgatatccatgtgcatcgattaacgcctccatttttggactcccatactgtt
atgagtaatcatacggggatgatagatgttattcgggacagaacaggagatctgttcaag
ttctcgaaaaatggttccagcgtagtcaatgagcgaaggaagaaccgtgatcgacagaga
aatgctagggaatccgtcaggagtgataattctgctcttgagaaagtggtcagaaaagga
agcaacggcaccagacatgatggacgtggtactcggacaaatcccccacctagatattct
agagcagacattcagcgacaacggcaggccttgcctgcatacaaagttcgagaacagttt
ttaaaggtggtgagagaaaatcaagttgtagtggtaatcggagaaacaggttctggtaaa
actacacagcttccccagtttctctatggagaaggttacaaagaacgtggattgattggg
attactcaacctagaagagtggctgctgtctctgttgcgcaaagggtcagcgaagaaatg
aacgtcaaattgggagaagaagtcggtttcagcattcgttttgaagatcgttcttcctca
aagactcgtattaagtttatgaccgatggtattttattaagagagactttgcaagatgag
gatcttgacaagtactcatgtatcattatggatgaagcccatgagagatctttgaacacg
gacattttgattggtttgttcaagaagttgcttgccagaagacgtgacttgaagttaata
gtgacatctgccactttgaatgccgataaattctcttcgttttttggaaatgctgagcag
ttcattattccaggaagaacataccctgtggatatcatgttttcatcggtccctgtgatg
gattatgtggaagaggcggtgaagcaggtgctaagagttcatttaagtgcggaaaacaag
ggtgatatacttgtatttatgacaggacaagaagatatcgaagtgacatgctctcagatt
gaagaggagctcgataatttgagaaagttggatgaaaccatcaagccccttcaagttctt
cctatttattccactttacctgcggatttgcaggcgagaatctttgagaggtccgagtat
cgtaaatgtattgtggcaaccaacattgcagagacttctttgactgtagacggtatcggt
ttcgtcatcgatactggattgatgaagttgaaagtttacaatgcaagattgagtatggaa
tctttgcagatcactccgatttctttggcacaagccaatcagagagcaggtagagctgga
agaacgggtccaggtacttgttacaggctgtatactttaactgccgctcaaacagagatg
ctccccgagccgatcccggagatacagcgaaccaatttggagaataccattctcctactt
aaatctttgaaggtgaaagacttgagccgatttcccttcttggatagaccttccatagaa
tcgattagtactgcacagtatcagctatggtctgaaggggctctcgacaactttggggat
ctaacattgttgggagagaggatgtctcgatttcctattgagccgactctttctaaattc
cttattttgtcgacgttggatcgattccattgctccaaagaagttgtcactatagtggct
atgctttccattccgcccatttttgtccgtccaaacaacgatatgggacttcagaagaaa
tccgattcctctagagagaagtttcaagtggctgaaagtgatcatctcaccctactcaac
atctacgatcagttcatgagtcacgggcgaaatgaaaaatggtgtcagcataatttttta
cagcataagtcgttacggcgtgccagcgagatcagagaacagttggttcagatcatgaag
aacaacaaacttgatttaactgttcaggattgtgaagactggaacctaattagagaatgt
gtctgtgcagcattttttctgaatggagctagtttcaagaagtatggtcaatatcaacac
cttagaagtggcctagagatggctttacaccccacttcagctttatacggcatgggagat
cttccaaaatacgtggtatatcacgaagtaattcttagtggacgagtgcagcacatgaac
tacgtgagtacagtgaaaggagaatggttgatagaatatggaggagtcttttatagtaaa
cgagtgagaggggtgagcagtaaggagcatcaaaggaggaaagagacagagtatgaggag
tatctacaagcaagtaagaagtaa
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