Brettanomyces nanus: FOA43_003286
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Entry
FOA43_003286 CDS
T07002
Name
(RefSeq) uncharacterized protein
KO
K07573
exosome complex component CSL4
Organism
bnn
Brettanomyces nanus
Pathway
bnn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOA43_003286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bnn03019
]
FOA43_003286
Messenger RNA biogenesis [BR:
bnn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
FOA43_003286
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
FOA43_003286
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
CSL4_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
62196686
NCBI-ProteinID:
XP_038779465
UniProt:
A0A875RQ50
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All DBs
Position
4:156543..157250
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AA seq
235 aa
AA seq
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MDFTSIVVPGQPIVPILSKKKQAKYLAGRNCRIETITYNGTEMPSIVSSVVGKVKVISKD
EDKSLQNFTVNVVSKHDPEYVHDDDDIGVKYASNTPMLDDIVLAKVTKITNSRVHVEILS
IDTQTGNEEELMMSSLITNENGENFRGIIRSLDIRSTERDKVKTWECFQPGDIVRAEVIS
LGDGINYYLSTSKNNLGVVLARSATGGELMYALDWETMVVPNTGELEKRKCAKPF
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atggattttacttctatagttgttccggggcagccgatagttccaattctttcaaagaaa
aagcaggcaaagtatctcgccggtcgtaattgccgtatagagaccatcacgtataatggt
acagagatgccttcgatagtgtcgtcagttgttggtaaagtcaaagtcatcagcaaggac
gaggacaagagtctgcagaattttacagtaaatgtggtttccaagcacgatccagagtat
gtgcacgatgacgatgacattggagtgaaatatgcgtcaaacactccaatgttggacgat
atcgttctagcaaaagtcaccaagatcaccaatagcagagtgcatgttgaaattctcagc
atagatactcaaacaggaaatgaagaggagttgatgatgtctagtttgattaccaatgaa
aacggagagaacttcagaggtattatcagatccttagatataagatcaacagaaagagac
aaagtgaagacatgggaatgctttcagccgggtgatattgtacgtgcagaggtgatctcc
cttggagatgggattaactactatttgagtacatccaagaacaacttaggtgttgttctt
gccagatcggcaactggtggcgaactgatgtatgcattggattgggagacgatggtggtg
ccgaatacgggtgaattagagaagagaaagtgtgccaagccgttctga
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