Brettanomyces nanus: FOA43_003576
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Entry
FOA43_003576 CDS
T07002
Symbol
DED1
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
bnn
Brettanomyces nanus
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bnn03019
]
FOA43_003576 (DED1)
03041 Spliceosome [BR:
bnn03041
]
FOA43_003576 (DED1)
03036 Chromosome and associated proteins [BR:
bnn03036
]
FOA43_003576 (DED1)
Enzymes [BR:
bnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOA43_003576 (DED1)
Messenger RNA biogenesis [BR:
bnn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
FOA43_003576 (DED1)
mRNA cycle factors
Common to processing body (P body) and stress granule
FOA43_003576 (DED1)
Spliceosome [BR:
bnn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
FOA43_003576 (DED1)
Chromosome and associated proteins [BR:
bnn03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
FOA43_003576 (DED1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
62196976
NCBI-ProteinID:
XP_038779755
UniProt:
A0A875RQ88
LinkDB
All DBs
Position
4:complement(755140..757038)
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AA seq
632 aa
AA seq
DB search
MAYVPPHRSRTEGSGDSSSSPVSSSRKGGDFFGHDDGNNSRDGYGSYGGNRGYGGNRGNR
GYSGYGRGGRGYGEGYGQRDNGYGGRNGSYSRGDNKRYGQGSFTDGVHHPAPKNEKLERE
LFGDPAEEKAPSGINFDNYDDIPVEVSGEGTPDPINQFTSPPINELLLENIELSLFNKPT
PVQKYSIPIVGSGRDLMACAQTGSGKTGGFLFPVLSSLFENGPSPVANEGNVFARRKAYP
SALVLAPTRELAIQNFEEARKYAYRSWVRVCVVYGGSDINSQLRNLERGCDLIVATPGRL
NDMLERGRVSLKNIRFLVLDEADRMLDMGFEPQIRHIVDGCDMPCAKDRQTLMFSATFPK
EIQVMARDFLDNYIFLSVGKVGSTSENITQRILYVEDDEKKSSLLDILSATDDTLTTGLT
LIFVETKKMADILSDFLISQNFPATSIHGDRTQSERERALEMFKTGRAPILVATAVAARG
LDIPNVTHVINYDLPGDVDDYVHRIGRTGRAGNNGLATAFLNRGNRNVVKDLIDLLHDSN
QEVPDFLSNIARESPSGRGGRGGRGRGRSTPYKDYRKYGGGNSGSSNWGSRSNGYGDNGY
GYNNSSSGNGNGNSSYGSNNYSSASSSNSQWW
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggcatatgttccaccacacagatcgagaactgaaggttccggcgactcatcatcgtct
cccgtttcttcttccagaaaaggaggagatttctttggacacgacgatggtaataacagc
agagatggctatggtagctacggtgggaaccgtggttacggtggcaatcgtggtaaccgt
ggttatagcggttatggccgtggcggcagaggctacggcgaaggttatggtcaaagagac
aatggctacggaggtagaaatggtagttacagcagaggcgataacaaaaggtatggtcaa
ggttcttttacggacggtgtccaccatcctgctccaaagaacgaaaaattggaacgggaa
ttatttggtgatccagccgaggagaaggccccttccggtattaactttgacaactatgat
gatattcccgttgaggtgtctggagaaggtacaccagatccaattaatcaattcacctcg
ccaccaattaacgagctcttactggaaaacattgagctttcccttttcaataagccaacc
ccagttcagaaatattctattccgatcgttggctctggcagagacctgatggcctgcgct
cagactggttctggtaagaccggtggtttcttgttcccggttttgagctctttgttcgaa
aatggtccttctccagtcgctaacgaaggcaacgtctttgcaagaagaaaagcctaccca
tccgctttggttctcgctccaactagagagttggccattcagaactttgaagaagccaga
aaatacgcctacaggtcgtgggtgcgtgtttgcgttgtctacggtggttctgacattaac
agtcaacttagaaacctagaaagaggctgcgatttgattgttgccactccaggtagatta
aatgatatgctcgaaagaggcagagtttctttgaagaatatccgtttcctagttttggac
gaggccgatagaatgctagatatgggttttgaacctcaaattagacatatcgtggatgga
tgtgacatgccttgcgccaaggacagacagactttgatgttctccgctacctttcctaag
gaaattcaggttatggccagagacttcttggataactacatctttttgtccgttggtaaa
gttggttccacttcagagaacattacacagagaattttgtatgttgaagatgacgaaaag
aaatcgagtttgctggacatcctatctgcgactgatgatactttgaccactggtttgaca
ttgatttttgttgagaccaagaaaatggccgatattttgtctgactttttaatctctcag
aatttccctgctacttcgattcatggtgatcgtactcaaagtgagagagaaagagctttg
gaaatgtttaaaactggtagggctccaattttggttgctactgcagttgctgccagaggt
ttggatattccaaatgttacccatgtcattaactacgatttgccgggtgatgtcgatgat
tacgtgcataggattggtaggactggtagagctggtaataacggcctggctactgcattt
ttgaacagaggtaatagaaacgttgtcaaggacttgatcgatcttttgcatgattctaat
caagaggttcctgatttcttgagtaatattgccagagagagtccatctggaagaggaggc
agaggaggtagaggcagaggtagaagtactccatataaggactacagaaagtatggaggt
ggaaatagtggctcctcaaactggggctccagaagcaacggctacggcgacaatggctac
ggatataataacagtagcagtggaaacggcaatggcaatagcagctatggcagcaataat
tactcttcggcttcttcttccaactctcaatggtggtaa
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