Brettanomyces nanus: FOA43_003653
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Entry
FOA43_003653 CDS
T07002
Symbol
SUB2
Name
(RefSeq) Suppressor of the cold-sensitive snRNP bioproteinsis mutant brr1-1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
3.6.4.13
]
Organism
bnn
Brettanomyces nanus
Pathway
bnn03013
Nucleocytoplasmic transport
bnn03015
mRNA surveillance pathway
bnn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOA43_003653 (SUB2)
09122 Translation
03013 Nucleocytoplasmic transport
FOA43_003653 (SUB2)
03015 mRNA surveillance pathway
FOA43_003653 (SUB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bnn03019
]
FOA43_003653 (SUB2)
03041 Spliceosome [BR:
bnn03041
]
FOA43_003653 (SUB2)
Enzymes [BR:
bnn01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
FOA43_003653 (SUB2)
Messenger RNA biogenesis [BR:
bnn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
FOA43_003653 (SUB2)
Spliceosome [BR:
bnn03041
]
Complex C
Other components
EJC/TREX
FOA43_003653 (SUB2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
FOA43_003653 (SUB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
62197053
NCBI-ProteinID:
XP_038779832
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All DBs
Position
4:join(923692..923914,924196..925274)
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AA seq
433 aa
AA seq
DB search
MSAEGEEELLDYSDSEEINVASTTAKTVEETKKEEETDKKGSYVGVHTTGFRDFLLKPEL
LRAIADCGFEHPSEVQQACIPQAILGNDVLCQAKSGLGKTAVFVLSTLQQLDPTPGEIST
IVICHTRELAYQIKNEYTRFSKYMPDVRTEVFYGGVSITKDAETLKNKDTCPHIVVGTPG
RLNALVRDKIIRLNNVKNFVIDECDKVLEQVDMRRDIQEIFRATPYQKQVMMFSATLSTE
IRPICKKFMKNPLEIYVDDEKKLTLHGLQQYYINLPEEKKNLKLAELLDSLEFNQVIIFV
KSTRRATALNKLLCESNFPSICVHSGIPQEERIARYKSFKEYNKRICVSTDVFGRGIDIE
RINVAVNYDMPSEADQYLHRVGRAGRFGTKGLSISFISSKEDEELLSQIQERFEVKIQEF
PAEGIDPSTYMNT
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctgaaggagaagaagaattattggattactctgactcggaggaaatcaatgtg
gcttcaaccactgcgaagaccgtcgaggagaccaagaaggaggaagaaactgacaagaag
ggctcttacgttggtgttcacaccactggtttcagagactttctattgaagccagaattg
ttgagagccattgccgattgcggttttgaacatccttcagaagtccaacaagcatgtata
ccacaagctattttgggtaacgatgtcttgtgccaggccaaatctggtttgggtaagact
gcagtttttgtcttgtccactttgcaacaattggatccaactcctggcgagatctcaacc
attgtgatctgccatacaagagagttggcctaccaaatcaaaaatgagtacacacgattt
tccaagtatatgcccgacgttagaactgaagttttctacggtggagtttcaatcaccaag
gatgccgagactttgaagaacaaggatacttgtcctcacattgttgttggtaccccaggt
agattgaacgccttggttagagacaagattatcagattgaacaatgtcaaaaactttgtc
attgatgaatgtgataaggtcttagagcaagtggacatgagaagagatatccaagagatc
ttcagagctactccttaccagaagcaggttatgatgttctcggctactctatccactgaa
atcagacctatttgtaagaagttcatgaagaatccattagaaatttatgttgatgatgaa
aagaaattaaccttgcacggtttgcagcaatactatatcaaccttccagaggagaagaag
aacttaaagttggccgagctgttggattccttagaattcaatcaggtgatcatctttgtt
aaatccactagaagagccactgccttaaataagttgctatgcgagtctaatttcccttct
atttgtgttcactctggtattcctcaggaagagagaatagccagatacaagtcgttcaag
gagtacaacaagcgtatatgtgtttctacagatgtttttggtagaggtattgacattgaa
agaatcaatgtcgccgttaactacgatatgccaagtgaggccgatcaatacttgcataga
gttggtagagcaggtaggttcggtactaagggtttgtctatttcgtttatctctagtaag
gaggacgaggagcttttgtctcaaatccaagaaagatttgaggttaaaatccaggaattc
ccagctgaaggtatcgatccttccacctatatgaacacctga
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