KEGG   Brettanomyces nanus: FOA43_003653
Entry
FOA43_003653      CDS       T07002                                 
Symbol
SUB2
Name
(RefSeq) Suppressor of the cold-sensitive snRNP bioproteinsis mutant brr1-1
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:3.6.4.13]
Organism
bnn  Brettanomyces nanus
Pathway
bnn03013  Nucleocytoplasmic transport
bnn03015  mRNA surveillance pathway
bnn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bnn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FOA43_003653 (SUB2)
  09122 Translation
   03013 Nucleocytoplasmic transport
    FOA43_003653 (SUB2)
   03015 mRNA surveillance pathway
    FOA43_003653 (SUB2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bnn03019]
    FOA43_003653 (SUB2)
   03041 Spliceosome [BR:bnn03041]
    FOA43_003653 (SUB2)
Enzymes [BR:bnn01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     FOA43_003653 (SUB2)
Messenger RNA biogenesis [BR:bnn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     FOA43_003653 (SUB2)
Spliceosome [BR:bnn03041]
 Complex C
  Other components
   EJC/TREX
    FOA43_003653 (SUB2)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    FOA43_003653 (SUB2)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 62197053
NCBI-ProteinID: XP_038779832
LinkDB
Position
4:join(923692..923914,924196..925274)
AA seq 433 aa
MSAEGEEELLDYSDSEEINVASTTAKTVEETKKEEETDKKGSYVGVHTTGFRDFLLKPEL
LRAIADCGFEHPSEVQQACIPQAILGNDVLCQAKSGLGKTAVFVLSTLQQLDPTPGEIST
IVICHTRELAYQIKNEYTRFSKYMPDVRTEVFYGGVSITKDAETLKNKDTCPHIVVGTPG
RLNALVRDKIIRLNNVKNFVIDECDKVLEQVDMRRDIQEIFRATPYQKQVMMFSATLSTE
IRPICKKFMKNPLEIYVDDEKKLTLHGLQQYYINLPEEKKNLKLAELLDSLEFNQVIIFV
KSTRRATALNKLLCESNFPSICVHSGIPQEERIARYKSFKEYNKRICVSTDVFGRGIDIE
RINVAVNYDMPSEADQYLHRVGRAGRFGTKGLSISFISSKEDEELLSQIQERFEVKIQEF
PAEGIDPSTYMNT
NT seq 1302 nt   +upstreamnt  +downstreamnt
atgtcagctgaaggagaagaagaattattggattactctgactcggaggaaatcaatgtg
gcttcaaccactgcgaagaccgtcgaggagaccaagaaggaggaagaaactgacaagaag
ggctcttacgttggtgttcacaccactggtttcagagactttctattgaagccagaattg
ttgagagccattgccgattgcggttttgaacatccttcagaagtccaacaagcatgtata
ccacaagctattttgggtaacgatgtcttgtgccaggccaaatctggtttgggtaagact
gcagtttttgtcttgtccactttgcaacaattggatccaactcctggcgagatctcaacc
attgtgatctgccatacaagagagttggcctaccaaatcaaaaatgagtacacacgattt
tccaagtatatgcccgacgttagaactgaagttttctacggtggagtttcaatcaccaag
gatgccgagactttgaagaacaaggatacttgtcctcacattgttgttggtaccccaggt
agattgaacgccttggttagagacaagattatcagattgaacaatgtcaaaaactttgtc
attgatgaatgtgataaggtcttagagcaagtggacatgagaagagatatccaagagatc
ttcagagctactccttaccagaagcaggttatgatgttctcggctactctatccactgaa
atcagacctatttgtaagaagttcatgaagaatccattagaaatttatgttgatgatgaa
aagaaattaaccttgcacggtttgcagcaatactatatcaaccttccagaggagaagaag
aacttaaagttggccgagctgttggattccttagaattcaatcaggtgatcatctttgtt
aaatccactagaagagccactgccttaaataagttgctatgcgagtctaatttcccttct
atttgtgttcactctggtattcctcaggaagagagaatagccagatacaagtcgttcaag
gagtacaacaagcgtatatgtgtttctacagatgtttttggtagaggtattgacattgaa
agaatcaatgtcgccgttaactacgatatgccaagtgaggccgatcaatacttgcataga
gttggtagagcaggtaggttcggtactaagggtttgtctatttcgtttatctctagtaag
gaggacgaggagcttttgtctcaaatccaagaaagatttgaggttaaaatccaggaattc
ccagctgaaggtatcgatccttccacctatatgaacacctga

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