KEGG   Brettanomyces nanus: FOA43_003793
Entry
FOA43_003793      CDS       T07002                                 
Name
(RefSeq) uncharacterized protein
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
bnn  Brettanomyces nanus
Pathway
bnn03022  Basal transcription factors
bnn03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bnn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    FOA43_003793
  09124 Replication and repair
   03420 Nucleotide excision repair
    FOA43_003793
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bnn03021]
    FOA43_003793
   03400 DNA repair and recombination proteins [BR:bnn03400]
    FOA43_003793
Transcription machinery [BR:bnn03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     FOA43_003793
DNA repair and recombination proteins [BR:bnn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     FOA43_003793
SSDB
Motif
Pfam: BSD PH_TFIIH
Other DBs
NCBI-GeneID: 62197193
NCBI-ProteinID: XP_038779969
UniProt: A0A875SC59
LinkDB
Position
4:1188117..1190117
AA seq 666 aa
MPASVSTTAFHRKKAGTISIIEDVEPPMVVWKCIDSSVSHPLVEIPLDNIVNLQATPASS
DKMMLKIGLKAGTLKKDIDNSAPARNKNNTLFTFKTRANMDEVKLALQQIIARKKSAKQI
NESSRPTTPFTGDESTPAHSKESTPSSSSIPLISRDNLGNDELLANLLDSKNLLKNLTLQ
QKLLRENPELMKTFTDAVIKSGLDPEEFWSTRVHLLRSFAIQHNQKRGPYNVLSTIKPVA
SSDNEVNVSVTREKIHEIFKQYPIVRKAYDDNVPKISEGEFWSRFFSSKLFRKLRGEKVN
LYDRGDITLDKYLYYDPDYDGEEEDEDVDKLLEDQEAKESLDKNNKKRGKSQVDQITASK
KKVKLFRGEDEKVSKCIDILGNEEDDPQLKGNTPDVTMKSNQDPDLVNVLRTMNRLSRRM
MSNIKEDKPNADLDNEFKDELEIKDLDDKEKVEYNELTYTQRSNISSSIVPSELIKQAMT
QSDLNPALNDYDQFISLFKEKFHDEEKLDLTSVYYQIKKSIYDSYKDVTSIVRKNAKQSS
QSWSKKSIDVLSSNDIKDAKSDMPKNRLESLRLTQSTSIEFLRHFWLHFNSISTSSMSTN
PNFKTELIQLRKCYFSLEKCLERVSANLSNSEGEERISEERVLKQLIESLKQAMKRYDDA
IIDPKH
NT seq 2001 nt   +upstreamnt  +downstreamnt
atgcccgcatctgtttcgactaccgcatttcataggaaaaaggcaggaaccatctccata
atcgaggatgtggagcctcctatggttgtttggaagtgtattgattcatctgttagccat
cctttagtggaaattcctctagacaatatagtcaatctacaggctacaccagcaagcagc
gacaaaatgatgttgaaaatcggcttgaaggctggaaccttgaagaaggatattgataat
agtgctcctgctagaaataagaacaatacattgttcacctttaagacccgagccaatatg
gatgaagttaaattagcattacaacagatcatcgcacgtaaaaagtccgccaagcagatc
aacgaaagcagtcgtcctaccaccccttttaccggtgatgagtctacacctgcacactcg
aaggaatctactccgtcttccagtagcattccattaatctctagagataatttgggtaac
gatgaattgttggcaaatctattggattccaagaatttactgaagaacctcacgttacag
cagaaacttcttcgagagaatcctgaattgatgaagacttttacggatgcagtgataaaa
agtggcttggatcccgaagagttttggtcaacgagggttcatcttttaagatcgtttgcc
attcaacataatcagaaacgaggaccttacaatgtccttagtacgatcaaaccggtggct
tccagtgacaatgaggtgaatgtcagtgttaccagggaaaaaatccatgaaatcttcaag
cagtatccgatagttagaaaggcttatgatgataatgttcccaaaattagtgaaggtgaa
ttttggtcgaggtttttctcttccaagttattcagaaaacttagaggtgagaaggttaat
ctatacgatagaggtgatattactttggacaagtacttatactatgatcctgattatgat
ggggaagaggaagacgaggacgtcgacaaattgttagaggaccaagaagctaaagaatca
ttggataaaaacaacaagaaacgaggaaaatcacaggttgatcaaataacagcctccaag
aagaaagtgaaattgttcagaggagaagatgaaaaggtttccaagtgtatcgacattctt
ggtaacgaagaggatgaccctcaattgaagggtaatacaccggatgtgacgatgaaaagt
aatcaggatccagatcttgttaatgttctcagaacaatgaacagattaagtaggagaatg
atgtcaaacattaaagaggacaaacctaatgctgacttggacaacgaatttaaagatgag
ctagagatcaaagatctcgatgataaagaaaaagtggaatataacgagttgacgtataca
cagagatcaaatatctcttccagtattgttccatctgagcttataaaacaggcaatgact
caatccgacttgaatccggcattgaatgattatgaccagttcatctccttattcaaggaa
aagtttcatgatgaagagaagttggacttaacatctgtttactaccagattaagaagtct
atatacgactcctataaagatgtgacgagtattgtgaggaaaaatgcaaagcagtcaagc
cagtcgtggagtaagaaaagcattgatgtcctttctagcaatgatataaaagatgcgaaa
agtgacatgccaaagaatcggttggaaagcttaaggctaacgcagtcgacatccattgaa
tttcttcggcatttctggctacacttcaattcgatatctacctcttccatgtctacaaat
ccaaactttaagacggagctgattcagctcaggaaatgttactttagtctcgagaagtgc
ttggaaagggttagcgctaacttgagcaactccgagggcgaagaaaggatttccgaggaa
agagttctgaaacagcttatagagtccttgaaacaagccatgaaacgctacgacgatgcc
atcatagacccaaaacactga

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