Brettanomyces nanus: FOA43_003858
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Entry
FOA43_003858 CDS
T07002
Name
(RefSeq) uncharacterized protein
KO
K10570
DNA excision repair protein ERCC-8
Organism
bnn
Brettanomyces nanus
Pathway
bnn03420
Nucleotide excision repair
bnn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
FOA43_003858
09124 Replication and repair
03420 Nucleotide excision repair
FOA43_003858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bnn04121
]
FOA43_003858
03400 DNA repair and recombination proteins [BR:
bnn03400
]
FOA43_003858
Ubiquitin system [BR:
bnn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
FOA43_003858
DNA repair and recombination proteins [BR:
bnn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
FOA43_003858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_Nup120_160
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
62197258
NCBI-ProteinID:
XP_038780034
UniProt:
A0A875SA49
LinkDB
All DBs
Position
4:complement(join(1340356..1341545,1341620..1341623))
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AA seq
397 aa
AA seq
DB search
MTSVNALALDSIDNRYLLSGGGDSSIKLWDLQSRDDSKWMSTDAESVYKPAYIIPAKTVH
QFGITHLKWWPDNGMWLSSSYDYSLKVFNSDTMQPVHSFNLESRVLNFDFDPQGSNSLVA
CCLDGGVGGIRLVDLRTLADSQTLGGGGKSKGGFGYMLSCAWSPTDHNLVVSGSQDGYCI
GWDIRASNGCLFTLDYNLTTRNYTNSNRQLLFYEDIPRAHNGGINSLMFNDVGTELITLG
TDEKIRVWDLTTGSKPLNKSINFGPLVRNKSSQYVQMCLSPTIESEMQYLWFPSENGELL
IYRIQDGKLVARLTRHGNGLISSKVHALVYGRNNCIRYYAGCHDGSISVWGYAEDGMEED
NAPVNFDNGADNEQETTDTKPVDILDKIYHEMSASKA
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcagtcaatgcattagcattggacagtatagacaatcgatatttgctttctggt
ggtggtgattcgtcaataaaactttgggacttacaatctagggacgattccaagtggatg
tcgacggatgccgagtcggtttacaagcctgcctatattatacctgccaagactgtccat
caatttggtataacacatttgaaatggtggccggataatggcatgtggctttcgtcttcc
tacgactactccttgaaagtatttaactcggatactatgcagccggtacattcgtttaac
ctggaatcgagagtattaaactttgatttcgatcctcaaggctccaactcactagtggca
tgctgccttgatggtggcgttggtggaatcagattggttgatcttagaactttggcagat
tcacagacattgggcgggggcggaaaatctaaaggtggctttggatatatgttgagctgt
gcttggtcgcctacagatcacaatttggtggtgagcgggtctcaggatggttactgtata
ggctgggatatcagagcatcgaatggatgtcttttcaccctggattacaatttgactacg
agaaattatacaaacagtaatcgacagctactgttttatgaagatataccaagggcacac
aatggagggataaatagtttgatgtttaacgatgttggtacggaactaatcactttaggt
acagacgaaaagattagagtgtgggatttgactacagggtctaaacctcttaacaaatca
ataaattttggaccgttggtgagaaataaatcctctcagtacgttcagatgtgcctaagc
ccgaccattgaatcagagatgcagtatctttggtttccatctgaaaatggcgagctactt
atttatcggattcaggacggtaaactagtggcaagattgactcgtcacggcaatggactg
atatcgtctaaagtgcatgctctggtgtacggacgaaacaattgcataagatattacgca
ggatgtcacgatggttccatatcagtctgggggtatgctgaagacggtatggaggaggat
aatgctccagtaaattttgataatggcgcagataatgagcaagagactacagataccaag
cctgttgatatcttagacaagatataccatgagatgagtgcatccaaagcttaa
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