Brettanomyces nanus: FOA43_004046
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Entry
FOA43_004046 CDS
T07002
Symbol
DBP5
Name
(RefSeq) RNA helicase required for poly(A+) mRNA export
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
bnn
Brettanomyces nanus
Pathway
bnn03013
Nucleocytoplasmic transport
bnn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
FOA43_004046 (DBP5)
03015 mRNA surveillance pathway
FOA43_004046 (DBP5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bnn03019
]
FOA43_004046 (DBP5)
Enzymes [BR:
bnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOA43_004046 (DBP5)
Messenger RNA biogenesis [BR:
bnn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
FOA43_004046 (DBP5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
62197446
NCBI-ProteinID:
XP_038780219
UniProt:
A0A875SD36
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All DBs
Position
4:complement(join(1716159..1717690,1717756..1717762))
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AA seq
512 aa
AA seq
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MSSTNTTKEDATTLLSKLSLAEKKGKEEQGANNFTTEVVKETLQAPVVPVVPAAPAVPAV
SAVPSIVKTKVASDPVEPAPEVTKKTDKEENENKTNLIDSSYEVKVNLADIQADSNSPLF
SVKSFEELGLSEELLKGLYAMKFSKPSKIQEKALPLLVANPPRNLIGQSQSGTGKTAAFA
LAMLTRVDINDPSIQAVCLSPARELARQTLDVIQEMGKYTPVKFQLVVPGVLERNQTVNS
QIIVGTPGLMLDLVRRRRIDLSKTKIFVLDEADNMLDQQGLADQCVRFKKMLPKNVQLAL
FSATFAEEVKRYAKKFVPNANTLELKHEELNVKAIKQLYMDCNSEDHKFECLCELYGLLT
IASSIIFVQRKKTADKLYFKMKQEGHAVSVLHGDLDTKERDRLIDDFREGRSKVLITTNV
LARGIDIPSVSMVVNYDMPFDKNGKPDPATYLHRIGRTGRFGRTGVSISFIHDKESYECL
KYISQYFGDIELTRVPTDDWDEVEKIVKKVIK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtaccaatactaccaaagaggacgctaccactttactctccaagctctcattg
gctgagaagaagggaaaagaggagcagggtgccaacaatttcaccaccgaagttgtcaag
gagactcttcaggctcctgtggttcctgtggttccagcggctccagcggttccagcggtt
tctgccgttccttcgattgtgaaaacaaaagtcgcttcagatccagttgagcctgcacca
gaggtcaccaagaaaacagacaaagaggaaaatgaaaacaaaaccaacttgatagattca
tcatatgaggtcaaggtcaatttggcagatatacaggcagattctaattcgccgcttttt
tctgtaaaatcctttgaggaattgggtctctcagaggagttgttgaagggtctttacgct
atgaagttctccaaaccatccaagattcaagaaaaggcactacccttactagttgcaaac
ccaccgagaaaccttataggccagtctcaatcaggtacaggtaaaacggcagcatttgcc
ttggctatgctcacacgcgtggacatcaatgacccttctatacaggctgtttgtctttca
cctgctcgtgaattggcacgtcaaacgctggatgtcatccaggaaatgggtaagtacacc
cctgtaaagttccagttagttgttccaggagttttagagagaaatcaaactgtcaattct
cagatcatcgtgggtactcctggtttaatgcttgatttggtcagaagacgccgtattgac
ctctccaaaaccaagatatttgtattggatgaggctgataatatgttggatcaacaggga
ttggctgatcaatgcgttagatttaagaaaatgcttcccaagaacgttcaacttgccttg
ttttccgctacttttgctgaggaggttaaaagatatgctaaaaagtttgttccaaacgcc
aatactttggagttaaaacatgaggagttgaatgtgaaagccatcaaacaattatacatg
gattgcaattcagaggatcacaaatttgagtgtctctgtgagttgtacggcttgttaacg
attgcctcgtccattatctttgttcagagaaagaagacggcagataaattatacttcaaa
atgaaacaagagggtcatgcagtatctgtgttgcacggagacttggacactaaggaaagg
gatagactcattgatgactttagagaaggaaggtcgaaggttcttattacaacaaatgtg
ttggcaagaggtatcgatattccttctgtttctatggtagtcaactacgatatgcctttt
gataagaatggtaaacctgaccctgccacctaccttcacagaatcggaagaactggtaga
tttggtagaacaggagtttccatttcgtttatacacgataaagaatcctatgaatgcttg
aaatatatttcccagtattttggtgatatagagttgactagagttccgacagacgactgg
gacgaggttgagaagattgtgaagaaggtaattaaatga
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