KEGG   Brettanomyces nanus: FOA43_004242
Entry
FOA43_004242      CDS       T07002                                 
Name
(RefSeq) uncharacterized protein
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
bnn  Brettanomyces nanus
Pathway
bnn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bnn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FOA43_004242
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bnn03019]
    FOA43_004242
Messenger RNA biogenesis [BR:bnn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     FOA43_004242
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     FOA43_004242
SSDB
Motif
Pfam: LSM ARM_LRRK2 Hfq Peroxin-22
Other DBs
NCBI-GeneID: 62197642
NCBI-ProteinID: XP_038780413
LinkDB
Position
4:complement(2123982..2124425)
AA seq 147 aa
MPNTTPEDLYLQSYPFTTAAAIIGSVDRKIIVTLWDGRTLVGVLRTFDQFGNLVIHDGVE
RIYLLDKKQYAQSTKLQTYLIRGENVVMMAEMDIDKEDESLAQLTQVDFVDAQKVWKSRC
QSALDRNSVESVVFHDNGIFGAACTLY
NT seq 444 nt   +upstreamnt  +downstreamnt
atgccaaatacaacacccgaagacctctaccttcaatcctacccattcacaacagctgcc
gcaattatcggttctgttgatcgaaaaattatagtgaccctttgggatggccgtactttg
gttggagtactaagaacttttgaccagttcggtaacttggtaatccacgacggcgtggaa
cgtatctacttgttagataagaagcagtatgctcaatctacaaagctacagacgtacctg
atcagaggagagaatgtggttatgatggccgagatggatatcgacaaagaggatgaatca
ttagcacagttaacgcaggtggatttcgttgatgcccagaaagtctggaaaagtcgctgt
caaagtgccttggacagaaacagtgtggaaagtgtcgttttccacgacaacggaatcttc
ggtgccgcatgtacactatattag

DBGET integrated database retrieval system