Brettanomyces nanus: FOA43_004242
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Entry
FOA43_004242 CDS
T07002
Name
(RefSeq) uncharacterized protein
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
bnn
Brettanomyces nanus
Pathway
bnn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bnn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOA43_004242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bnn03019
]
FOA43_004242
Messenger RNA biogenesis [BR:
bnn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
FOA43_004242
mRNA degradation factors
5'-3' decay
Lsm complex
FOA43_004242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
ARM_LRRK2
Hfq
Peroxin-22
Motif
Other DBs
NCBI-GeneID:
62197642
NCBI-ProteinID:
XP_038780413
LinkDB
All DBs
Position
4:complement(2123982..2124425)
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AA seq
147 aa
AA seq
DB search
MPNTTPEDLYLQSYPFTTAAAIIGSVDRKIIVTLWDGRTLVGVLRTFDQFGNLVIHDGVE
RIYLLDKKQYAQSTKLQTYLIRGENVVMMAEMDIDKEDESLAQLTQVDFVDAQKVWKSRC
QSALDRNSVESVVFHDNGIFGAACTLY
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
atgccaaatacaacacccgaagacctctaccttcaatcctacccattcacaacagctgcc
gcaattatcggttctgttgatcgaaaaattatagtgaccctttgggatggccgtactttg
gttggagtactaagaacttttgaccagttcggtaacttggtaatccacgacggcgtggaa
cgtatctacttgttagataagaagcagtatgctcaatctacaaagctacagacgtacctg
atcagaggagagaatgtggttatgatggccgagatggatatcgacaaagaggatgaatca
ttagcacagttaacgcaggtggatttcgttgatgcccagaaagtctggaaaagtcgctgt
caaagtgccttggacagaaacagtgtggaaagtgtcgttttccacgacaacggaatcttc
ggtgccgcatgtacactatattag
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