Bacteroides nordii: K8P02_04545
Help
Entry
K8P02_04545 CDS
T07941
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bno
Bacteroides nordii
Pathway
bno03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K8P02_04545 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bno03400
]
K8P02_04545 (mfd)
Enzymes [BR:
bno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K8P02_04545 (mfd)
DNA repair and recombination proteins [BR:
bno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K8P02_04545 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UAK43569
LinkDB
All DBs
Position
1207075..1210452
Genome browser
AA seq
1125 aa
AA seq
DB search
MTITELQQQYAFHPNVTVMCQLLKDVSVNHIFCGGLCASSASLFSSALVQKSPSPFVFIL
GDLEEAGYFYHDLTQVLGGEQVLFFPSSFRRAIKYGQKDAANEILRTEVLSRLQKGEKGL
CIVTYPDALAEKVVSQEELDDKTLKLNVGEHVDSGFITEVLHSYGFEYVDYVYEPGQYAV
RGSIIDVFSFASEYPYRIDFFGDEVESIRTFEVDTQLSREKKNSIVIVPDLALAGAMSSS
FLDFIPKDTILAMRDFLWLRERIQTVHDEALTPQALAVQEAEDNGGIKLEGALIDGAKFT
VRALDFRRMEFGNKPTGTPDATIEFETTAQPIFHKNFDLVAASFREYREKGYSLYICSDS
RKQTERIRAIFEDRGDEIPFIAVERTLHEGFADDALRLCIFTDHQLFDRFHKYNLKSDKA
RSGKVALSLKELNQFTPGDYVVHTDHGVGRFSGLVRIPNGDTTQEVMKLVYQNEDVVFVS
IHSLHKVSKYKGKEGEAPRLNKLGTGAWEKLKERTKTKIKDIARDLILLYSKRREEKGFA
YSPDSFLQRELEASFIYEDTPDQSKATAEVKADMERDRPMDRLVCGDVGFGKTEVAIRAA
FKAVADNKQVAVLVPTTVLAYQHFQTFRERLKGLPCKVEYLSRARTAAQTKAVLKGLKEG
EVGILIGTHRILGKDVHFKDLGLLVIDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRT
LQFSLMGARDLSVISTPPPNRYPIQTELHTFNEEIITDAINFEMSRNGQVFFVNNRIANL
PELKAMIQRHIPDCRIAIGHGQMEPADLEQIILDFVNYDYDVLLATTIIESGIDIPNANT
IIINQAQNFGLSDLHQMRGRVGRSNKKAFCYLLAPPLSSLTPEGRRRLQAIENFSDLGSG
IHIAMQDLDIRGAGNMLGAEQSGFIADLGYETYQKILSEAVYELKTDEFAELYANEIKGE
GAVSGEQFVDECQVESDLELLLPANYVTGSSERMLLYRELDGLTLDKDVEAFRSRLEDRF
GPVPSETEELLRIVPLRRLAARLGAEKVFLKAGRMTLFFVSNPDSPFYQSQAFGKVIDYM
MKYTRRCDLREQNGRRSMVIKDIPNVETAVSILQEMVALPVKQEE
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgactatcaccgaactgcaacaacaatacgcctttcatcccaacgtgactgttatgtgt
caattgctgaaagacgtttctgtaaatcacattttttgtggaggattgtgcgcttcttct
gcttcgcttttttcgtcagcgttggtacagaaaagtccgtctccttttgtgtttattttg
ggcgatctggaggaagccggttatttttatcatgacctgacacaggtgttgggaggagag
caggtgctttttttcccttcttcttttcgccgtgccatcaagtatggtcagaaggatgca
gccaatgagatattacgtaccgaggtgctcagccgtttgcagaaaggagaaaagggtttg
tgcattgttacctatcccgatgcattggcggagaaagtcgtttcgcaggaagaactggac
gataagactcttaagctgaacgtaggtgaacatgttgattccggttttattacggaggta
ttgcatagctacggtttcgaatacgtagattatgtttatgaaccgggacaatatgctgta
cgcggtagtatcattgatgttttttcttttgcatcggagtatccttatcgtatcgatttc
tttggagacgaagtagagagtatccgcacatttgaggtcgatacacagctgtcgcgtgag
aagaaaaatagcattgttatcgttccggatctggcgctggcaggggcgatgtcttcttca
ttccttgattttatcccgaaagatacgatattggccatgcgtgatttcctttggttgcgt
gaacgtattcagaccgttcatgatgaggcattgactccgcaggcacttgcagtacaggaa
gccgaagataatggggggattaagcttgaaggggcattaattgatggtgccaaatttacc
gttcgcgctcttgatttccgaaggatggagtttggcaacaagcctaccggaacaccggat
gctacgattgagtttgagacaacggcacaacctatttttcataagaatttcgatctggta
gctgcttctttcagagaatatcgtgagaagggctattcactttatatctgtagtgacagc
aggaaacagactgaacgtatacgggctatttttgaagacagaggtgacgagatacctttt
attgcagtagagcgtactctgcatgaaggttttgccgatgatgccttgcgtctgtgtatc
tttacagatcatcagttgttcgaccgttttcataaatacaaccttaaaagtgataaagcc
cgttcgggaaaagtagctctttcgctcaaagagcttaaccagtttacccctggtgactat
gtggtgcataccgatcacggcgtggggcgtttttcaggattggtacgtatccctaacggt
gataccacccaggaagtcatgaaattggtgtatcagaacgaggatgtggtttttgtgtct
atccattcgttgcacaaagtatcgaagtacaaaggtaaagagggggaagctccccgcctg
aataaattaggtacgggtgcctgggagaagctaaaggaacgtactaaaactaagattaaa
gatattgcgcgcgatttgattctgctttattcaaagcgccgtgaagaaaagggatttgcc
tatagtcccgatagctttctgcaacgtgagttggaggcttcttttatttatgaagataca
cccgaccagagtaaggctactgccgaggtgaaggcagatatggaacgtgaccgcccgatg
gatcgccttgtttgtggggatgtggggtttggaaagacagaagtggctatccgtgctgcc
tttaaggcagtggccgataataaacaggtggcagtactggtacctactaccgtgttggct
tatcagcactttcaaacctttcgcgaacgactgaaaggactcccctgtaaagtggagtac
ctgagccgtgcccgtactgccgcacaaacgaaagcggtacttaaaggacttaaagaagga
gaagtgggtatccttatcggtacgcaccgtatcctgggtaaggatgtgcatttcaaagat
ttgggcctgttggtcattgacgaagagcagaaatttggtgtatcggtaaaggagaaacta
cgccaactgaaagtgaacgtagatacgctgactatgacggcaacgcctatcccgcgcacg
ctccagttttcgctgatgggagcacgtgatctgagtgtgatatctaccccgccgcccaac
cgttatcccatacaaacggaactgcatacttttaatgaagagattataaccgatgctatt
aacttcgaaatgagccgcaacggacaggtgttttttgtaaacaaccgtatagcgaatctg
ccggaactgaaagccatgatacaacggcatattccggattgccgcatcgctatcggacac
gggcaaatggagcctgccgatctggaacagattatcctcgactttgtaaattatgattat
gatgtgttgcttgccactacgattatcgagagtggaattgacatccctaatgctaatacc
atcatcataaaccaggcgcagaattttggtttgagtgatcttcaccagatgcgcgggcgt
gtgggacgtagtaacaagaaggcattctgttatctgcttgctcctccgctttcgtcactt
actcctgaggggaggagacgattgcaggctatcgaaaatttctccgatctggggagtggc
atccacattgccatgcaggatcttgatatccgtggtgcaggaaatatgctgggggcggaa
caaagtggtttcattgccgacttaggatatgagacgtatcagaaaatcctttcagaggcc
gtgtatgagttgaagacagacgagtttgccgagttgtatgccaacgagataaaaggtgaa
ggagctgtcagtggcgagcagtttgtagatgagtgccaggtagagagtgacctggagttg
ttgttgcctgccaactatgtcacaggaagtagtgaacgcatgttgctgtatcgcgagttg
gacggattgactctggacaaagatgtggaggcttttcgttcgcggcttgaagaccgcttt
ggccctgtgccttccgaaacggaagaactgctccgtatcgttccgcttcgtcgccttgca
gcccgtctgggagcagaaaaggtattccttaaagcagggcgtatgacgttgtttttcgta
tccaatccggacagcccattctatcagagccaggcttttggtaaggtgatagattatatg
atgaagtacacccgtcgttgcgatttgcgcgaacagaacggacgccgttcgatggtaata
aaagatatcccgaatgtagagactgccgtgagtatattgcaggaaatggtggctttaccg
gtgaaacaggaagaataa
DBGET
integrated database retrieval system
