Bacteroides nordii: K8P02_15940
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Entry
K8P02_15940 CDS
T07941
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bno
Bacteroides nordii
Pathway
bno03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bno00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K8P02_15940 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bno03021
]
K8P02_15940 (rpoC)
03400 DNA repair and recombination proteins [BR:
bno03400
]
K8P02_15940 (rpoC)
Enzymes [BR:
bno01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K8P02_15940 (rpoC)
Transcription machinery [BR:
bno03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K8P02_15940 (rpoC)
DNA repair and recombination proteins [BR:
bno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K8P02_15940 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UAK41656
LinkDB
All DBs
Position
complement(4050680..4054963)
Genome browser
AA seq
1427 aa
AA seq
DB search
MAFRKENKTKSNFSKISIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
IKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIQLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDSIIYYERYVVIQPGVKAEDGVAEFDLLSEEEYLDILDTLPKDNQYLED
TDPNKFIAKMGAEAIYDLLARLDLDALSYELRHRAGNDASQQRKNEALKRLQVVESFRAS
RGRNKPEWMIVRIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAP
EVILRNEKRMLQESVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPELKMGECGIPKLMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVI
WDILEHVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFNADFDGDQMAV
HLPLSNEAILEAQMLMLQSHNILNPANGAPITVPAQDMVLGLYYITKLRTGAKGEGLTFY
GPEEALIAYNEGKVDIHAPVKVIVKDVDENGNIIDVMRETSVGRVIVNEIVPPEAGYINT
IISKKSLRDIISDVIKVCGVAKAADFLDGIKNLGYQMAFKGGLSFNLGDIIIPKEKEVLV
QKGYDEVEQVINNYNMGFITNNERYNQVIDIWTHVNSELSNILMKTISSDDQGFNSVYMM
LDSGARGSKEQIRQLSGMRGLMAKPQKAGAEGGQIIENPILSNFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVSHDVIINEEDCGTLRGLVCTDLKNNDEVIATLYERI
LGRVSVHDIIHPTTGELLVSGGEEITEDIAKKIQESPIESVEIRSVLTCESKKGVCAKCY
GRNLATSRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHAGGTAANIAANASIVAKNAARLE
FEELRTVDVVDETGEAAKVVVGRLAEVRFVDVNTNIVLSTHNVPYGSTLYVADGEVVEKG
KLIAKWDPFNAVIITEATGKIEFESVVENVTYKVESDEATGLREIIIIESKDKTKVPSVH
ILTEDGDLIRTYNLPVGGHVIIENGQKVKAGEVIVKIPRAVGKAGDITGGLPRVTELFEA
RNPSNPAVVSEIDGEVTMGKIKRGNREIVVTSKTGEVKKYLVNLSKQILVQENDYVRAGT
PLSDGATTPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEIIVRQMMRKVEIDE
PGDTRFLEQQVVDKLEFMEENDRIWGKKVVVDAGDSQTMQPGQIVTARKLRDENSMLKRR
DLKPVEVRDAIAATSTQILQGITRAALQTSSFMSAASFQETTKVLNEAAINGKIDKLEGM
KENVICGHLIPAGTGQREFDKVIVGSKEEYDRILANKKTVLDYNEVE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaagaaaataagacgaagagcaatttctcgaaaatctctatcggtttg
gcttctccggaagaaatcttagagaattcgagtggtgaagtattaaagcctgaaaccatt
aattatcgtacttacaagcctgaacgtgacggtttgttttgtgagcgtatctttggtcct
attaaggattatgagtgccattgcggtaagtataaacgtatccgttataaaggtatcgtc
tgcgaccgttgtggtgtagaagttactgaaaagaaagtacgtcgtgaacgtatgggacat
attcagctggtagtgccggtggcacacatctggtatttccgttcacttcctaataagatc
ggttacttgttgggtttgcctaccaagaagctggattctattatttattacgagcgttac
gttgtgattcagccaggtgttaaagctgaagacggtgtagctgaatttgatttgctttca
gaagaagaatatctggatattctggatacacttccgaaagataatcagtatctggaagat
acagatccgaataagtttattgctaagatgggtgcagaggctatttatgatcttctggca
cgtcttgacctggatgcattatcatacgagttgcgtcatcgcgccggaaatgatgcttca
cagcagcgtaaaaatgaggctctgaaacgtttgcaggtagtggagtccttccgtgcatct
cgtggacgtaataagccggaatggatgatcgtgcgtattgtaccggttattcctcctgaa
cttcgcccattagtaccgttggatggtggtcgttttgctacatcggatttgaacgacctt
tatcgtcgcgtaattatccgtaacaatcgtttgaaacgtttgattgaaatcaaggctccg
gaagtaattttacgtaatgaaaaacgtatgcttcaggaatctgttgattcattgtttgat
aactcacgtaaatcaagtgctgttaagacggatgctaatcgtccattgaaatcattatct
gatagtttgaaaggtaaacagggacgttttcgtcaaaacttacttggtaaacgtgttgac
tattcagctcgttcggttatcgttgtaggtcctgagttgaaaatgggtgagtgtggtatt
cctaaattgatggctgccgaactttataaaccgtttatcattcgtaagttgatcgaacgc
ggcattgtgaagactgtgaaatcagcgaagaagattgtagaccgtaaggaacctgtgatc
tgggatattcttgagcatgtaatgaaaggacaccctgtgctgttgaaccgtgcaccgact
cttcaccgtttgggtattcaggcttttcagccgaagatgatcgaaggtaaagctattcag
ttgcatccacttgcttgtacggcgttcaatgcagattttgatggtgaccagatggctgtg
cacttgcctttgagtaatgaagctattcttgaagcacaaatgttgatgcttcagtcgcat
aatattttgaatccggctaatggtgctcctattacggtacctgcacaggatatggtactt
ggtttgtattacataactaagttgcgtacgggagctaaaggggaaggtttgactttctat
ggtccggaagaagcattgattgcttacaatgaaggtaaggttgatattcatgccccggtg
aaagtaatcgtaaaggatgttgacgaaaacggtaatattatagatgtgatgcgtgagact
tcggttgggcgtgttattgttaacgagattgttccacctgaagctggttatattaatacc
attatctctaaaaaatcactccgtgacatcattagtgatgtaattaaggtatgcggtgtg
gcgaaagctgctgatttccttgatggaattaaaaatcttggttaccagatggcctttaag
ggtggtttgtcatttaacttaggtgatattattatcccgaaagagaaagaggtattggtt
caaaaaggatatgacgaagtagagcaggtgatcaacaactataatatgggtttcatcacc
aataatgaacgttataatcaggtgatcgatatctggacacatgttaactcagaactgtca
aacattttgatgaagactatttcttcagatgaccaaggttttaattctgtatatatgatg
cttgactctggtgcgcgtggttctaaagaacagattcgtcagctgtcaggtatgcgtggt
ttgatggctaaaccgcagaaggctggtgcagagggcggacagattattgaaaacccaatc
ttatcgaactttaaagaaggactttcggtgttggagtattttatttctacccatggtgct
cgtaaaggtttggctgatactgcgttaaagactgccgatgcaggatatctgactcgtcgt
ctggtggacgtttcacatgatgtgattattaatgaagaggactgtggtacacttcgtgga
ctggtttgtacagacttgaagaataacgatgaagttattgcaactctatatgaacgtatt
cttggccgtgtatccgtacatgatattatccatcctacaacaggtgaattgcttgtttca
ggtggggaagaaataacagaagacattgctaagaagattcaggaatctccgattgagagt
gttgaaatccgttcggtattgacttgtgaatctaaaaaaggtgtatgtgctaagtgttac
ggacgtaatcttgcaaccagccgtatggttcaaaaaggcgaggctgttggtgtaatcgct
gcccagtcaattggtgaaccgggtacacagctgactttgcgtaccttccatgccggtggt
actgctgctaatattgcagccaatgcaagtattgtagctaagaatgcagctcgtctggag
tttgaagaactccgtactgtagacgttgttgatgaaaccggtgaagctgcgaaagtagta
gtaggtcgtttggctgaagtgcgtttcgtggatgttaatacgaatatagttttgtctact
cacaatgtaccttatggctctacattgtatgtggctgatggagaagtggttgagaaaggt
aagcttattgctaagtgggatccgttcaacgctgttattatcactgaggctactggtaag
attgaatttgagagtgttgttgagaatgtcacttataaggttgaatcggatgaagcaacc
ggacttcgtgaaattatcattatagagtctaaagacaagacgaaggtaccttctgttcat
attcttactgaagacggtgatttgatacgtacttacaacttgcctgtgggtggacacgtt
atcattgagaatggccagaaggtgaaagccggtgaggttattgtgaagataccgcgtgcg
gtaggtaaggctggtgatatcactggtggtcttcctcgtgttactgaactgttcgaagca
cgtaatccgtcgaatccggctgttgtatcggaaattgatggtgaggttactatgggtaaa
attaaacgtggtaatcgtgaaattgtggttacatccaaaaccggtgaggttaaaaaatat
ctggttaacttatctaagcagattctggtgcaggagaatgactatgttcgtgctggtact
ccgttgtcagatggtgctactactccagctgatattttggctattaaaggtccgacagca
gtacaggaatatattgtgaatgaagttcaggatgtataccgtttgcaaggtgtgaaaatt
aacgataaacactttgaaattattgttcgtcagatgatgcgtaaagttgaaattgacgaa
ccgggagatactcgtttccttgaacagcaggttgttgacaaacttgagtttatggaagag
aatgatcgtatctggggcaaaaaggttgttgtagatgctggtgattctcagacaatgcag
ccaggacagattgtaactgcacgtaagctgcgtgatgaaaatagtatgctgaaacgccgt
gacttgaagccagttgaagtacgtgatgctattgctgctacttctactcagattcttcag
ggtattacacgtgccgctttgcaaacttccagctttatgtcagccgcatctttccaggaa
acaacgaaagtattgaatgaagctgctataaatggcaagattgataagcttgaaggtatg
aaggaaaatgtgatttgtggtcatttaattcctgccggtacaggtcagcgtgagtttgat
aaggttattgttggttcaaaggaagagtatgatcgtatcttagctaataagaaaacggta
cttgattataatgaagtagaataa
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